Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: CLEC7A ENSG00000172243

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Description

C-type lectin domain family 7, member A [Source:HGNC Symbol;Acc:14558]

Gene Synonyms

BGR, CANDF4, CLECSF12, DECTIN1, dectin-1, hDectin-1

Location

Chromosome 12: 10,269,376-10,282,857 reverse strand.

GRCh37:CM000674.1

About this gene

This gene has 13 transcripts (splice variants), 6 paralogues and is associated with 3 phenotypes.

Transcripts

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Transcript ID	Name	bp	Protein	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000304084.8	CLEC7A-013	1130	247aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS41753	Q9BXN2	NM_197947.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000353231.5	CLEC7A-001	2446	201aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS8613	Q9BXN2	NM_022570.4	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000298523.5	CLEC7A-012	1154	143aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS53744	Q9BXN2	NM_197949.2	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000396484.2	CLEC7A-004	1000	168aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS8614	Q9BXN2	NM_197950.2	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000533022.1	CLEC7A-009	625	189aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS41754	Q9BXN2	NM_197948.2	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000525605.1	CLEC7A-014	573	136aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q68D78	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000310002.4	CLEC7A-003	425	77aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS8617	Q9BXN2	NM_197954.2	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000529761.1	CLEC7A-007	1592	247aa	Nonsense mediated decay	CCDS41753	Q9BXN2	-	-
ENST00000531192.1	CLEC7A-006	915	192aa	Nonsense mediated decay		Q9BXN2	-	-
ENST00000465100.1	CLEC7A-002	881	116aa	Nonsense mediated decay		Q9BXN2	-	-
ENST00000349926.5	CLEC7A-008	355	45aa	Nonsense mediated decay		Q9BXN2	-	-
ENST00000534609.1	CLEC7A-005	3725	No protein	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000528799.1	CLEC7A-011	1006	No protein	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

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Paralogues

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Download paralogues

Type	Ancestral taxonomy	Ensembl identifier & gene name	Compare	Location	Percentage of the paralogous sequence matching the query sequenceTarget %id	Percentage of the query sequence matching the sequence of the paralogueQuery %id
Genes (homologues) that have evolved by duplication.Paralogues	Last common ancestor with Platypus (Ornithorhynchus anatinus)Mammals (Mammalia)	ENSG00000173391 OLR1 oxidized low density lipoprotein (lectin-like) receptor 1 [Source:HGNC Symbol;Acc:8133]	Alignment (protein) Alignment (cDNA)	12:10,310,902-10,324,737:-1	29.00 %	32.00 %
Genes (homologues) that have evolved by duplication.Paralogues	Last common ancestor with Platypus (Ornithorhynchus anatinus)Mammals (Mammalia)	ENSG00000256660 CLEC12B C-type lectin domain family 12, member B [Source:HGNC Symbol;Acc:31966]	Alignment (protein) Alignment (cDNA)	12:10,163,226-10,171,218:1	25.00 %	28.00 %
Genes (homologues) that have evolved by duplication.Paralogues	Last common ancestor with Platypus (Ornithorhynchus anatinus)Mammals (Mammalia)	ENSG00000197992 CLEC9A C-type lectin domain family 9, member A [Source:HGNC Symbol;Acc:26705]	Alignment (protein) Alignment (cDNA)	12:10,183,276-10,218,565:1	26.00 %	25.00 %
Genes (homologues) that have evolved by duplication.Paralogues	Last common ancestor with Platypus (Ornithorhynchus anatinus)Mammals (Mammalia)	ENSG00000165682 CLEC1B C-type lectin domain family 1, member B [Source:HGNC Symbol;Acc:24356]	Alignment (protein) Alignment (cDNA)	12:10,138,241-10,166,023:-1	30.00 %	28.00 %
Genes (homologues) that have evolved by duplication.Paralogues	Last common ancestor with Platypus (Ornithorhynchus anatinus)Mammals (Mammalia)	ENSG00000150048 CLEC1A C-type lectin domain family 1, member A [Source:HGNC Symbol;Acc:24355]	Alignment (protein) Alignment (cDNA)	12:10,222,153-10,264,226:-1	23.00 %	26.00 %
Genes (homologues) that have evolved by duplication.Paralogues	Last common ancestor with Platypus (Ornithorhynchus anatinus)Mammals (Mammalia)	ENSG00000172322 CLEC12A C-type lectin domain family 12, member A [Source:HGNC Symbol;Acc:31713]	Alignment (protein) Alignment (cDNA)	12:10,103,915-10,148,293:1	21.00 %	23.00 %

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