Gene: COL11A1 ENSG00000060718

Description

collagen, type XI, alpha 1 [Source:HGNC Symbol;Acc:2186]

Gene Synonyms

CO11A1, COLL6, STL2

Location

Chromosome 1: 103,342,023-103,574,052 reverse strand.

GRCh37:CM000663.1

About this gene

This gene has 10 transcripts (splice variants), 219 orthologues, 37 paralogues and is associated with 14 phenotypes.

Transcripts

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Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000370096.3	COL11A1-001	7286	1806aa	ENSP00000359114.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS778	B4DQZ0 P12107 Q4FAC4	NM_001854.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000358392.2	COL11A1-202	7327	1818aa	ENSP00000351163.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B4DQZ0 C9JMN2 P12107	NM_080629.2	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000353414.4	COL11A1-201	7174	1767aa	ENSP00000302551.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS53348	B4DQZ0 P12107	NM_001190709.1	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000512756.1	COL11A1-008	5442	1690aa	ENSP00000426533.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS780	B4DQZ0 P12107 Q4FAC4	NM_080630.3	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000427239.1	COL11A1-002	1709	569aa	ENSP00000408640.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JMN2	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000447608.1	COL11A1-003	776	200aa	ENSP00000410177.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H7C381	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000461720.1	COL11A1-004	678	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000475980.1	COL11A1-005	377	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000470170.1	COL11A1-007	785	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000465209.1	COL11A1-006	297	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

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Gene: COL11A1 ENSG00000060718

Paralogues