Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Molecular function
- GO: Biological process
- GO: Cellular component
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: CLEC12B ENSG00000256660

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Description

C-type lectin domain family 12, member B [Source:HGNC Symbol;Acc:31966]

Gene Synonyms

UNQ5782

Location

Chromosome 12: 10,163,226-10,171,218 forward strand.

GRCh37:CM000674.1

About this gene

This gene has 5 transcripts (splice variants) and 6 paralogues.

Transcripts

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Transcript ID	Name	bp	Protein	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000338896.5	CLEC12B-001	1097	276aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS44830	Q2HXU8	NM_001129998.1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000396502.1	CLEC12B-003	3029	232aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS8610	Q2HXU8	NM_205852.2	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000539155.1	CLEC12B-004	2898	65aa	Nonsense mediated decay		F5H4H7	-	-
ENST00000544853.1	CLEC12B-002	1193	232aa	Nonsense mediated decay	CCDS8610	Q2HXU8	-	-
ENST00000535903.1	CLEC12B-005	531	No protein	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

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Paralogues

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Download paralogues

Type	Ancestral taxonomy	Ensembl identifier & gene name	Compare	Location	Percentage of the paralogous sequence matching the query sequenceTarget %id	Percentage of the query sequence matching the sequence of the paralogueQuery %id
Genes (homologues) that have evolved by duplication.Paralogues	Last common ancestor with African mammals (Afrotheria)Placental mammals (Eutheria)	ENSG00000172322 CLEC12A C-type lectin domain family 12, member A [Source:HGNC Symbol;Acc:31713]	Alignment (protein) Alignment (cDNA)	12:10,103,915-10,148,293:1	32.00 %	32.00 %
Genes (homologues) that have evolved by duplication.Paralogues	Last common ancestor with Platypus (Ornithorhynchus anatinus)Mammals (Mammalia)	ENSG00000165682 CLEC1B C-type lectin domain family 1, member B [Source:HGNC Symbol;Acc:24356]	Alignment (protein) Alignment (cDNA)	12:10,138,241-10,166,023:-1	31.00 %	26.00 %
Genes (homologues) that have evolved by duplication.Paralogues	Last common ancestor with Platypus (Ornithorhynchus anatinus)Mammals (Mammalia)	ENSG00000150048 CLEC1A C-type lectin domain family 1, member A [Source:HGNC Symbol;Acc:24355]	Alignment (protein) Alignment (cDNA)	12:10,222,153-10,264,226:-1	29.00 %	30.00 %
Genes (homologues) that have evolved by duplication.Paralogues	Last common ancestor with Platypus (Ornithorhynchus anatinus)Mammals (Mammalia)	ENSG00000197992 CLEC9A C-type lectin domain family 9, member A [Source:HGNC Symbol;Acc:26705]	Alignment (protein) Alignment (cDNA)	12:10,183,276-10,218,565:1	27.00 %	24.00 %
Genes (homologues) that have evolved by duplication.Paralogues	Last common ancestor with Platypus (Ornithorhynchus anatinus)Mammals (Mammalia)	ENSG00000172243 CLEC7A C-type lectin domain family 7, member A [Source:HGNC Symbol;Acc:14558]	Alignment (protein) Alignment (cDNA)	12:10,269,376-10,282,857:-1	28.00 %	25.00 %
Genes (homologues) that have evolved by duplication.Paralogues	Last common ancestor with Platypus (Ornithorhynchus anatinus)Mammals (Mammalia)	ENSG00000173391 OLR1 oxidized low density lipoprotein (lectin-like) receptor 1 [Source:HGNC Symbol;Acc:8133]	Alignment (protein) Alignment (cDNA)	12:10,310,902-10,324,737:-1	26.00 %	26.00 %

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