Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: OLR1 ENSG00000173391

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Description

oxidized low density lipoprotein (lectin-like) receptor 1 [Source:HGNC Symbol;Acc:8133]

Gene Synonyms

CLEC8A, LOX-1, LOX1, LOXIN, SCARE1, SLOX1

Location

Chromosome 12: 10,310,902-10,324,737 reverse strand.

GRCh37:CM000674.1

About this gene

This gene has 11 transcripts (splice variants) and 6 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000309539.3	OLR1-001	2460	273aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS8618	F5H001 F5H0N6 F5H3G7 F5H7N8 J3QTI8 P78380	NM_002543.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000545927.1	OLR1-008	1008	189aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS53746	F5H001 F5H0N6 P78380	NM_001172633.1	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000432556.2	OLR1-002	950	181aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS53745	B7ZAN8 P78380	NM_001172632.1	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000544577.1	OLR1-003	924	165aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F5GZH1	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000543993.1	OLR1-005	822	77aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B7ZAN8	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000539518.1	OLR1-007	732	214aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F5H001 F5H0N6 F5H3G7 F5H7N8 J3QTI8	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000339968.6	OLR1-010	591	104aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F5H0N6 J3QTI8	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000538745.1	OLR1-009	583	123aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F5H0N6 F5H3G7 J3QTI8	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000538873.1	OLR1-013	516	57aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F5H0N6	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000543414.1	OLR1-006	466	104aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F5H001	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000536989.1	OLR1-014	569	No protein	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

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Paralogues

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Download paralogues

Type	Ancestral taxonomy	Ensembl identifier & gene name	Compare	Location	Percentage of the paralogous sequence matching the query sequenceTarget %id	Percentage of the query sequence matching the sequence of the paralogueQuery %id
Genes (homologues) that have evolved by duplication.Paralogues	Last common ancestor with Platypus (Ornithorhynchus anatinus)Mammals (Mammalia)	ENSG00000172243 CLEC7A C-type lectin domain family 7, member A [Source:HGNC Symbol;Acc:14558]	Alignment (protein) Alignment (cDNA)	12:10,269,376-10,282,857:-1	32.00 %	29.00 %
Genes (homologues) that have evolved by duplication.Paralogues	Last common ancestor with Platypus (Ornithorhynchus anatinus)Mammals (Mammalia)	ENSG00000256660 CLEC12B C-type lectin domain family 12, member B [Source:HGNC Symbol;Acc:31966]	Alignment (protein) Alignment (cDNA)	12:10,163,226-10,171,218:1	26.00 %	26.00 %
Genes (homologues) that have evolved by duplication.Paralogues	Last common ancestor with Platypus (Ornithorhynchus anatinus)Mammals (Mammalia)	ENSG00000197992 CLEC9A C-type lectin domain family 9, member A [Source:HGNC Symbol;Acc:26705]	Alignment (protein) Alignment (cDNA)	12:10,183,276-10,218,565:1	27.00 %	24.00 %
Genes (homologues) that have evolved by duplication.Paralogues	Last common ancestor with Platypus (Ornithorhynchus anatinus)Mammals (Mammalia)	ENSG00000165682 CLEC1B C-type lectin domain family 1, member B [Source:HGNC Symbol;Acc:24356]	Alignment (protein) Alignment (cDNA)	12:10,138,241-10,166,023:-1	24.00 %	20.00 %
Genes (homologues) that have evolved by duplication.Paralogues	Last common ancestor with Platypus (Ornithorhynchus anatinus)Mammals (Mammalia)	ENSG00000150048 CLEC1A C-type lectin domain family 1, member A [Source:HGNC Symbol;Acc:24355]	Alignment (protein) Alignment (cDNA)	12:10,222,153-10,264,226:-1	24.00 %	24.00 %
Genes (homologues) that have evolved by duplication.Paralogues	Last common ancestor with Platypus (Ornithorhynchus anatinus)Mammals (Mammalia)	ENSG00000172322 CLEC12A C-type lectin domain family 12, member A [Source:HGNC Symbol;Acc:31713]	Alignment (protein) Alignment (cDNA)	12:10,103,915-10,148,293:1	24.00 %	24.00 %

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