Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Molecular function
- GO: Biological process
- GO: Cellular component
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: CLEC12A ENSG00000172322

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Description

C-type lectin domain family 12, member A [Source:HGNC Symbol;Acc:31713]

Gene Synonyms

CLL-1, CLL1, DCAL-2, DCAL2, MICL

Location

Chromosome 12: 10,103,915-10,148,293 forward strand.

GRCh37:CM000674.1

About this gene

This gene has 7 transcripts (splice variants) and 6 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000355690.4	CLEC12A-007	1428	275aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS55803	A8MVL9 Q5QGZ9	NM_001207010.1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000304361.4	CLEC12A-001	1549	265aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS8608	A8MVL9 Q5QGZ9	NM_201623.3	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000434319.2	CLEC12A-002	1515	213aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A8MVL9 Q5QGZ9	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000350667.4	CLEC12A-003	699	232aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS8609	Q5QGZ9	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000396507.3	CLEC12A-006	570	165aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A8MVL9	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000449959.2	CLEC12A-004	1681	No protein	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000543839.1	CLEC12A-005	1069	No protein	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

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Paralogues

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Download paralogues

Type	Ancestral taxonomy	Ensembl identifier & gene name	Compare	Location	Percentage of the paralogous sequence matching the query sequenceTarget %id	Percentage of the query sequence matching the sequence of the paralogueQuery %id
Genes (homologues) that have evolved by duplication.Paralogues	Last common ancestor with Laurasiatherian mammals (Laurasiatheria)Placental mammals (Eutheria)	ENSG00000256660 CLEC12B C-type lectin domain family 12, member B [Source:HGNC Symbol;Acc:31966]	Alignment (protein) Alignment (cDNA)	12:10,163,226-10,171,218:1	32.00 %	32.00 %
Genes (homologues) that have evolved by duplication.Paralogues	Last common ancestor with Platypus (Ornithorhynchus anatinus)Mammals (Mammalia)	ENSG00000165682 CLEC1B C-type lectin domain family 1, member B [Source:HGNC Symbol;Acc:24356]	Alignment (protein) Alignment (cDNA)	12:10,138,241-10,166,023:-1	27.00 %	22.00 %
Genes (homologues) that have evolved by duplication.Paralogues	Last common ancestor with Platypus (Ornithorhynchus anatinus)Mammals (Mammalia)	ENSG00000150048 CLEC1A C-type lectin domain family 1, member A [Source:HGNC Symbol;Acc:24355]	Alignment (protein) Alignment (cDNA)	12:10,222,153-10,264,226:-1	30.00 %	31.00 %
Genes (homologues) that have evolved by duplication.Paralogues	Last common ancestor with Platypus (Ornithorhynchus anatinus)Mammals (Mammalia)	ENSG00000197992 CLEC9A C-type lectin domain family 9, member A [Source:HGNC Symbol;Acc:26705]	Alignment (protein) Alignment (cDNA)	12:10,183,276-10,218,565:1	24.00 %	21.00 %
Genes (homologues) that have evolved by duplication.Paralogues	Last common ancestor with Platypus (Ornithorhynchus anatinus)Mammals (Mammalia)	ENSG00000172243 CLEC7A C-type lectin domain family 7, member A [Source:HGNC Symbol;Acc:14558]	Alignment (protein) Alignment (cDNA)	12:10,269,376-10,282,857:-1	23.00 %	21.00 %
Genes (homologues) that have evolved by duplication.Paralogues	Last common ancestor with Platypus (Ornithorhynchus anatinus)Mammals (Mammalia)	ENSG00000173391 OLR1 oxidized low density lipoprotein (lectin-like) receptor 1 [Source:HGNC Symbol;Acc:8133]	Alignment (protein) Alignment (cDNA)	12:10,310,902-10,324,737:-1	24.00 %	24.00 %

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