Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: CLEC1A ENSG00000150048

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Description

C-type lectin domain family 1, member A [Source:HGNC Symbol;Acc:24355]

Gene Synonyms

CLEC1, MGC34328

Location

Chromosome 12: 10,222,153-10,264,226 reverse strand.

GRCh37:CM000674.1

About this gene

This gene has 5 transcripts (splice variants) and 6 paralogues.

Transcripts

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Transcript ID	Name	bp	Protein	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000315330.4	CLEC1A-001	2685	280aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS8612	F8WCT4 Q8NC01	NM_016511.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000457018.2	CLEC1A-003	1686	247aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E9PFB4	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000420265.2	CLEC1A-004	1165	188aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E7ESV9	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000414501.2	CLEC1A-002	562	70aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F8WCT4	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000544104.1	CLEC1A-006	563	66aa	Nonsense mediated decay		F5H038	-	-

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Paralogues

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Download paralogues

Type	Ancestral taxonomy	Ensembl identifier & gene name	Compare	Location	Percentage of the paralogous sequence matching the query sequenceTarget %id	Percentage of the query sequence matching the sequence of the paralogueQuery %id
Genes (homologues) that have evolved by duplication.Paralogues	Last common ancestor with Platypus (Ornithorhynchus anatinus)Mammals (Mammalia)	ENSG00000165682 CLEC1B C-type lectin domain family 1, member B [Source:HGNC Symbol;Acc:24356]	Alignment (protein) Alignment (cDNA)	12:10,138,241-10,166,023:-1	31.00 %	25.00 %
Genes (homologues) that have evolved by duplication.Paralogues	Last common ancestor with Platypus (Ornithorhynchus anatinus)Mammals (Mammalia)	ENSG00000256660 CLEC12B C-type lectin domain family 12, member B [Source:HGNC Symbol;Acc:31966]	Alignment (protein) Alignment (cDNA)	12:10,163,226-10,171,218:1	30.00 %	29.00 %
Genes (homologues) that have evolved by duplication.Paralogues	Last common ancestor with Platypus (Ornithorhynchus anatinus)Mammals (Mammalia)	ENSG00000172322 CLEC12A C-type lectin domain family 12, member A [Source:HGNC Symbol;Acc:31713]	Alignment (protein) Alignment (cDNA)	12:10,103,915-10,148,293:1	31.00 %	30.00 %
Genes (homologues) that have evolved by duplication.Paralogues	Last common ancestor with Platypus (Ornithorhynchus anatinus)Mammals (Mammalia)	ENSG00000197992 CLEC9A C-type lectin domain family 9, member A [Source:HGNC Symbol;Acc:26705]	Alignment (protein) Alignment (cDNA)	12:10,183,276-10,218,565:1	21.00 %	18.00 %
Genes (homologues) that have evolved by duplication.Paralogues	Last common ancestor with Platypus (Ornithorhynchus anatinus)Mammals (Mammalia)	ENSG00000172243 CLEC7A C-type lectin domain family 7, member A [Source:HGNC Symbol;Acc:14558]	Alignment (protein) Alignment (cDNA)	12:10,269,376-10,282,857:-1	26.00 %	23.00 %
Genes (homologues) that have evolved by duplication.Paralogues	Last common ancestor with Platypus (Ornithorhynchus anatinus)Mammals (Mammalia)	ENSG00000173391 OLR1 oxidized low density lipoprotein (lectin-like) receptor 1 [Source:HGNC Symbol;Acc:8133]	Alignment (protein) Alignment (cDNA)	12:10,310,902-10,324,737:-1	24.00 %	24.00 %

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