Description
tumor necrosis factor receptor superfamily, member 1A [Source:HGNC Symbol;Acc:11916]
Gene Synonyms
CD120a, FPF, MS5, TBP1, TNF-R, TNF-R-I, TNF-R55, TNFAR, TNFR1, TNFR1-d2, TNFR55, TNFR60, p55, p55-R, p60
Location
Chromosome 12: 6,437,923-6,451,280 reverse strand.
GRCh37:CM000674.1
About this gene
This gene has 16 transcripts (splice variants), 188 orthologues, 21 paralogues and is associated with 6 phenotypes.
Transcripts
| Transcript ID | Name | bp | Protein | Translation ID | Biotype | CCDS | UniProt Match | RefSeq | Flags |
|---|---|---|---|---|---|---|---|---|---|
| ENST00000162749.2 | TNFRSF1A-001 | 2223 | 455aa | ENSP00000162749.2 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS8542 | F5H4T5 J9PH39 P19438 | NM_001065.3 | A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, |
| ENST00000540022.1 | TNFRSF1A-002 | 1527 | 412aa | ENSP00000438343.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | F5H061 J9PH39 | - | A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, | |
| ENST00000366159.4 | TNFRSF1A-004 | 1339 | 218aa | ENSP00000380389.3 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | F5H4T5 P19438 | - | A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, | |
| ENST00000539372.1 | TNFRSF1A-014 | 1063 | 298aa | ENSP00000442059.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | F5H4T5 F5H8A6 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000440083.2 | TNFRSF1A-013 | 1034 | 254aa | ENSP00000413224.2 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | F5H4T5 F5H6V7 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000536194.1 | TNFRSF1A-010 | 581 | 118aa | ENSP00000442919.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | F5H6Z2 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000534885.1 | TNFRSF1A-003 | 2069 | 122aa | ENSP00000441803.1 | Nonsense mediated decay | F5GWJ4 | - | - | |
| ENST00000543995.1 | TNFRSF1A-005 | 1531 | 72aa | ENSP00000442405.1 | Nonsense mediated decay | F5H7N1 | - | - | |
| ENST00000543048.1 | TNFRSF1A-011 | 571 | 71aa | ENSP00000439981.1 | Nonsense mediated decay | F5H4T5 | - | - | |
| ENST00000437813.3 | TNFRSF1A-012 | 634 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | - | |
| ENST00000543359.1 | TNFRSF1A-015 | 627 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | - | |
| ENST00000535038.1 | TNFRSF1A-007 | 578 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | - | |
| ENST00000535958.1 | TNFRSF1A-009 | 568 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | - | |
| ENST00000538363.1 | TNFRSF1A-008 | 554 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | - | |
| ENST00000537842.1 | TNFRSF1A-016 | 404 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | - | |
| ENST00000536717.1 | TNFRSF1A-006 | 1503 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - |