Gene: PTPRN ENSG00000054356

Description

protein tyrosine phosphatase, receptor type, N [Source:HGNC Symbol;Acc:9676]

Gene Synonyms

IA-2, IA-2/PTP, IA2, ICA3, ICA512, R-PTP-N

Location

Chromosome 2: 220,154,345-220,174,370 reverse strand.

GRCh37:CM000664.1

About this gene

This gene has 19 transcripts (splice variants), 256 orthologues and 35 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000295718.2	PTPRN-001	3784	979aa	ENSP00000295718.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS2440	C9J392 C9JCQ0 C9JJL7 Q16849 Q7KZS4 Q96IA0	NM_002846.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000409251.3	PTPRN-003	3622	950aa	ENSP00000386638.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS56168	C9J392 C9JCQ0 C9JJL7 Q16849	NM_001199763.1	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000423636.2	PTPRN-021	3313	889aa	ENSP00000392598.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS56167	C9J392 C9JCQ0 C9JJL7 Q16849 Q7KZS4 Q96IA0	NM_001199764.1	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000443981.1	PTPRN-020	1051	137aa	ENSP00000396842.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000446182.1	PTPRN-008	606	124aa	ENSP00000395379.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9J392 C9JCQ0 C9JJL7	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000440552.1	PTPRN-011	579	166aa	ENSP00000408036.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9J392 C9JCQ0 C9JR27	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000412847.1	PTPRN-012	563	125aa	ENSP00000388429.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9J392 C9JCQ0 C9JJL7	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000442029.1	PTPRN-013	541	86aa	ENSP00000396464.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9J392 C9JCQ0	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000451506.1	PTPRN-009	466	67aa	ENSP00000397105.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9J392	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000606213.1	PTPRN-005	592	52aa	ENSP00000475591.1	Nonsense mediated decay		U3KQ66	-	-
ENST00000497977.1	PTPRN-019	701	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000468454.1	PTPRN-014	504	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000462351.1	PTPRN-006	5099	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000460801.1	PTPRN-007	2239	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000476930.1	PTPRN-016	582	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000477819.1	PTPRN-015	579	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000489650.1	PTPRN-018	571	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000486480.1	PTPRN-017	563	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000484986.1	PTPRN-010	545	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Orthologues

As of the latest update in March 2020 we are not supporting data for species other than human on this GRCh37 site and the view you wish to use is disabled.

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You can still view this page on the following archive resources:

1. The Ensembl 75 archive represents a code and data freeze taken in February 2014.

2. The GRCh37 archive represents a code and data freeze taken in January 2019.

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Gene: PTPRN ENSG00000054356

Orthologues