Description
LIM and calponin homology domains 1 [Source:HGNC Symbol;Acc:29191]
Gene Synonyms
DKFZP686A01247, KIAA1102, LIMCH1A, LMO7B
Location
Chromosome 4: 41,361,624-41,702,061 forward strand.
GRCh37:CM000666.1
About this gene
This gene has 22 transcripts (splice variants), 300 orthologues and 1 paralogue.
Transcripts
| Transcript ID | Name | bp | Protein | Translation ID | Biotype | CCDS | UniProt Match | RefSeq | Flags |
|---|---|---|---|---|---|---|---|---|---|
| ENST00000313860.7 | LIMCH1-001 | 6165 | 1083aa | ENSP00000316891.7 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS33977 | D6R8Y0 D6RGH8 D6RJ93 Q9UPQ0 | NM_014988.2 | A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, |
| ENST00000396595.3 | LIMCH1-017 | 5740 | 902aa | ENSP00000379840.3 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS47047 | Q9UPQ0 | NM_001112719.1 | A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, |
| ENST00000381753.4 | LIMCH1-018 | 5705 | 890aa | ENSP00000371172.4 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS54765 | Q9UPQ0 | NM_001112720.1 | A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, |
| ENST00000503057.1 | LIMCH1-013 | 5467 | 1467aa | ENSP00000425631.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | B7Z656 D6R8Y0 D6RGH8 G5EA03 | - | A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, | |
| ENST00000513024.1 | LIMCH1-003 | 5129 | 910aa | ENSP00000425222.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | D6R8Y0 D6RGH8 D6RJ93 Q9UPQ0 | - | A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, | |
| ENST00000512820.1 | LIMCH1-007 | 5071 | 1069aa | ENSP00000424437.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | D6R8Y0 D6RGH8 D6RJ93 Q9UPQ0 | - | A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, | |
| ENST00000512946.1 | LIMCH1-005 | 5057 | 1057aa | ENSP00000424645.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS54763 | D6R8Y0 D6RGH8 D6RJ93 Q9UPQ0 | NM_001112717.1 | A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, |
| ENST00000508501.1 | LIMCH1-002 | 5054 | 1056aa | ENSP00000424825.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS54764 | D6R8Y0 D6RGH8 D6RJ93 Q9UPQ0 | NM_001112718.1 | A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, |
| ENST00000512632.1 | LIMCH1-006 | 4792 | 980aa | ENSP00000427045.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | D6R8Y0 D6RD46 D6RGH8 D6RJ93 | - | A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, | |
| ENST00000514096.1 | LIMCH1-014 | 3543 | 897aa | ENSP00000426334.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | E7EPK0 | - | A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, | |
| ENST00000509277.1 | LIMCH1-015 | 3474 | 916aa | ENSP00000422864.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | B7Z3F1 B7Z656 E9PDJ9 | - | A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, | |
| ENST00000511496.1 | LIMCH1-012 | 3439 | 897aa | ENSP00000421242.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | D6R8Y0 D6RGH8 D6RJ93 Q9UPQ0 | - | A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, | |
| ENST00000508466.1 | LIMCH1-019 | 3051 | 917aa | ENSP00000421656.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | B7Z656 | - | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete, | |
| ENST00000509638.1 | LIMCH1-004 | 1570 | 153aa | ENSP00000427311.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | D6R8Y0 D6RGH8 D6RJ93 | - | A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, | |
| ENST00000509454.1 | LIMCH1-016 | 1506 | 160aa | ENSP00000423355.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | Q6NVB9 | - | A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, | |
| ENST00000446625.2 | LIMCH1-010 | 789 | 126aa | ENSP00000411020.2 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | D6R8Y0 D6RGH8 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000511424.1 | LIMCH1-026 | 551 | 26aa | ENSP00000426353.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | D6RGH8 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000515785.1 | LIMCH1-021 | 1129 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | - | |
| ENST00000514190.1 | LIMCH1-024 | 540 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | - | |
| ENST00000515847.1 | LIMCH1-022 | 490 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | - | |
| ENST00000512228.1 | LIMCH1-023 | 473 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | - | |
| ENST00000505705.1 | LIMCH1-025 | 437 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | - |