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Sequence and assembly

Contigs

Genes and transcripts

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Coding transcripts only (in coding genes)

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Comprehensive Gene Annotations from GENCODE 19 (Genes (Comprehensive set from GENCODE 19))

The GENCODE Comprehensive set is the gene set for human and mouse
Basic Gene Annotations from GENCODE 19

The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).

Prediction transcripts

Variation

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Sequence variants (dbSNP and all other sources)

Sequence variants from all sources

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HapMap

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Enable/disable all Phenotype/disease variants by source

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Failed variants

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Enable/disable all Copy number variant probes

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Smaller structural variants (all sources) (SV - Smaller variants)

Structural variants from all sources which are less than 1Mb in length. The colours correspond to the structural variant classes.
For an explanation of the display, see the dbVar documentation.
Larger structural variants (all sources) (SV - Larger variants)

Structural variants from all sources which are at least 1Mb in length. The colours correspond to the structural variant classes.
For an explanation of the display, see the dbVar documentation.

Somatic mutations

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Somatic variants (all sources) (Variant - All somatic)

Somatic variants from all sources

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Somatic structural variants (all sources) (SV - Somatic)

Somatic structural variants from all sources. For an explanation of the display, see the dbVar documentation. In addition, we display the breakpoints in yellow.

Regulation

Regulatory features

Regulatory features

Features from Ensembl Regulatory Build.

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Fantom 5

Fantom 5 TSS/Enhancer Predictions
TarBase

Tarbase miRNA target predictions
VISTA

VISTA Enhancer Assay (http://enhancer.lbl.gov/)

Information and decorations

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Shows the length of the region being displayed
Variant Legend
Structural Variant Legend
Alignment Difference Legend
Regulation Legend
Methylation Legend
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