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Phylogenetic summary of protein families

This page provides a summary of the Ensembl phylogenetic analysis of protein families. The following views are available:

Overall Summary

Legend
Internal nodes (ancestral taxa) Node types Speciations Duplications Dubious nodes
Leaves (extant species) Gene tree coverage Genes in multi-species trees Genes in single-species trees Orphaned genes
Gene QC Validated genes Short genes Long genes Split genes
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Wallaby (Macropus eugenii)
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-
Tasmanian devil (Sarcophilus harrisii)
-------
Opossum (Monodelphis domestica)
-----------------------------------
-
Armadillo (Dasypus novemcinctus)
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Sloth (Choloepus hoffmanni)
----------
Hyrax (Procavia capensis)
-----------------------------------
-
Tenrec (Echinops telfairi)
----------
Elephant (Loxodonta africana)
----------
-
Rat (Rattus norvegicus)
----
-------
----
Mouse (Mus musculus)
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--------
Kangaroo rat (Dipodomys ordii)
-------------------------
-----------
Squirrel (Ictidomys tridecemlineatus)
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Guinea Pig (Cavia porcellus)
------------------------
-
Pika (Ochotona princeps)
----------------
Rabbit (Oryctolagus cuniculus)
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Human (Homo sapiens)
----------------
-
Chimpanzee (Pan troglodytes)
----------------
----
Gorilla (Gorilla gorilla gorilla)
-------
-
----
--------
Orangutan (Pongo abelii)
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Gibbon (Nomascus leucogenys)
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----------------
Macaque (Macaca mulatta)
-------------
--------------------
Marmoset (Callithrix jacchus)
----------
------------------------
Tarsier (Tarsius syrichta)
---------------------------------
-
Bushbaby (Otolemur garnettii)
----
----------
Mouse Lemur (Microcebus murinus)
-----------------------------------------
Tree Shrew (Tupaia belangeri)
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Panda (Ailuropoda melanoleuca)
-------------
-
Dog (Canis lupus familiaris)
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Ferret (Mustela putorius furo)
--------------------
Cat (Felis catus)
-----------------
-
Microbat (Myotis lucifugus)
----------------
Megabat (Pteropus vampyrus)
-----------------
-
Shrew (Sorex araneus)
------------------------------
----
Hedgehog (Erinaceus europaeus)
----
----------
-
Cow (Bos taurus)
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Sheep (Ovis aries)
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Alpaca (Vicugna pacos)
--------------------
Pig (Sus scrofa)
--------------------
Dolphin (Tursiops truncatus)
---------------------
Horse (Equus caballus)
--------------------------------------------------
Platypus (Ornithorhynchus anatinus)
----
-------
-
Flycatcher (Ficedula albicollis)
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Zebra Finch (Taeniopygia guttata)
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-
-
Chicken (Gallus gallus)
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Turkey (Meleagris gallopavo)
----
-----------------------------------
-----------
Duck (Anas platyrhynchos)
------------------------
Chinese softshell turtle (Pelodiscus sinensis)
-------------------------
Anole Lizard (Anolis carolinensis)
----------------------------------------------------------
X.tropicalis (Xenopus tropicalis)
-----------------------------------------------------------
Coelacanth (Latimeria chalumnae)
----
----------------
-
Zebrafish (Danio rerio)
-------------
Cave fish (Astyanax mexicanus)
-------------
-
Medaka (Oryzias latipes)
----------
----
----
Platyfish (Xiphophorus maculatus)
-----------------------
Stickleback (Gasterosteus aculeatus)
----
-------------
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-
Fugu (Takifugu rubripes)
------------------------------------------
----
-------
Tetraodon (Tetraodon nigroviridis)
------------------------
Tilapia (Oreochromis niloticus)
----
----------------------
Cod (Gadus morhua)
---------------------------------
Spotted gar (Lepisosteus oculatus)
----
-------------------------------------------------------------------
Lamprey (Petromyzon marinus)
----------------------------------------------------------------------
-
C.intestinalis (Ciona intestinalis)
-
-------
C.savignyi (Ciona savignyi)
-----------------------------------------------------------------------
-
C.elegans (Caenorhabditis elegans)
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Fruitfly (Drosophila melanogaster)
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S.cerevisiae (Saccharomyces cerevisiae)