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Phylogenetic summary of protein families

This page provides a summary of the Ensembl phylogenetic analysis of protein families. The following views are available:

Overall Summary

Legend
Internal nodes (ancestral taxa) Node types Speciations Duplications Dubious nodes
Leaves (extant species) Gene tree coverage Genes in multi-species trees Genes in single-species trees Orphaned genes
Gene QC Validated genes Short genes Long genes Split genes
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C.elegans (Caenorhabditis elegans)
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Fruitfly (Drosophila melanogaster)
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Wallaby (Macropus eugenii)
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-
Tasmanian devil (Sarcophilus harrisii)
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Opossum (Monodelphis domestica)
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-
Armadillo (Dasypus novemcinctus)
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Sloth (Choloepus hoffmanni)
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Chimpanzee (Pan troglodytes)
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-
Human (Homo sapiens)
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Gorilla (Gorilla gorilla gorilla)
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--------
Orangutan (Pongo abelii)
-------
-------
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Gibbon (Nomascus leucogenys)
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Macaque (Macaca mulatta)
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Marmoset (Callithrix jacchus)
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Tarsier (Tarsius syrichta)
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-
Mouse Lemur (Microcebus murinus)
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Bushbaby (Otolemur garnettii)
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-
Pika (Ochotona princeps)
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Rabbit (Oryctolagus cuniculus)
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-
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-
Rat (Rattus norvegicus)
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Mouse (Mus musculus)
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--------
Kangaroo rat (Dipodomys ordii)
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Squirrel (Ictidomys tridecemlineatus)
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Guinea Pig (Cavia porcellus)
-----------------------------------------
Tree Shrew (Tupaia belangeri)
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Elephant (Loxodonta africana)
-------
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-
Hyrax (Procavia capensis)
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Tenrec (Echinops telfairi)
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-
Hedgehog (Erinaceus europaeus)
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Shrew (Sorex araneus)
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Panda (Ailuropoda melanoleuca)
----------------------
-
Dog (Canis lupus familiaris)
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Ferret (Mustela putorius furo)
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Cat (Felis catus)
------------------------------------
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-
Microbat (Myotis lucifugus)
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Megabat (Pteropus vampyrus)
----------
----------
-
Sheep (Ovis aries)
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Cow (Bos taurus)
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Pig (Sus scrofa)
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Alpaca (Vicugna pacos)
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Dolphin (Tursiops truncatus)
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Horse (Equus caballus)
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Platypus (Ornithorhynchus anatinus)
----------
-------
-
Flycatcher (Ficedula albicollis)
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Zebra Finch (Taeniopygia guttata)
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-
-
Chicken (Gallus gallus)
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-------
Turkey (Meleagris gallopavo)
-
-------
-----------------------------------
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Duck (Anas platyrhynchos)
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Chinese softshell turtle (Pelodiscus sinensis)
-------------------------------
Anole Lizard (Anolis carolinensis)
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X.tropicalis (Xenopus tropicalis)
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Coelacanth (Latimeria chalumnae)
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-
Zebrafish (Danio rerio)
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Cave fish (Astyanax mexicanus)
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-
Medaka (Oryzias latipes)
----------------
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----
Platyfish (Xiphophorus maculatus)
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Stickleback (Gasterosteus aculeatus)
----------
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-
Tetraodon (Tetraodon nigroviridis)
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----
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Fugu (Takifugu rubripes)
------------------------------
Tilapia (Oreochromis niloticus)
-------
----------------------
Cod (Gadus morhua)
---------------------------------
Spotted gar (Lepisosteus oculatus)
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Lamprey (Petromyzon marinus)
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-
C.intestinalis (Ciona intestinalis)
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C.savignyi (Ciona savignyi)
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S.cerevisiae (Saccharomyces cerevisiae)