EnsemblEnsembl Home

Phylogenetic summary of ncRNA families

This page provides a summary of the Ensembl phylogenetic analysis of ncRNA families. The following views are available:

Overall Summary

Legend
Internal nodes (ancestral taxa) Node types Speciations Duplications Dubious nodes
Leaves (extant species) Gene tree coverage Genes in multi-species trees Genes in single-species trees Orphaned genes
Species-specific duplications Single-copy genes Multi-copy genes
------------------------------------
-
C.elegans (Caenorhabditis elegans)
-------
Fruitfly (Drosophila melanogaster)
-------
Tasmanian devil (Sarcophilus harrisii)
-------
-
Wallaby (Macropus eugenii)
----------
Opossum (Monodelphis domestica)
----------
Human (Homo sapiens)
----------
Sloth (Choloepus hoffmanni)
----------
Hyrax (Procavia capensis)
----------
Dolphin (Tursiops truncatus)
----------
Gibbon (Nomascus leucogenys)
----------
Tenrec (Echinops telfairi)
----------
Hedgehog (Erinaceus europaeus)
----------
Dog (Canis lupus familiaris)
-------
----
Alpaca (Vicugna pacos)
-------------
Pika (Ochotona princeps)
-------------
Shrew (Sorex araneus)
-------------
Ferret (Mustela putorius furo)
-------------
Elephant (Loxodonta africana)
-------------
Pig (Sus scrofa)
-------------
Cat (Felis catus)
-------------
Mouse (Mus musculus)
-------------
Gorilla (Gorilla gorilla gorilla)
-------------
Microbat (Myotis lucifugus)
----------
-
Tree Shrew (Tupaia belangeri)
----------
Cow (Bos taurus)
----------
Tarsier (Tarsius syrichta)
----------
Megabat (Pteropus vampyrus)
-------
----
Marmoset (Callithrix jacchus)
-------------
Rabbit (Oryctolagus cuniculus)
-------------
Macaque (Macaca mulatta)
----
----------
Horse (Equus caballus)
----------------
Guinea Pig (Cavia porcellus)
----------------
Bushbaby (Otolemur garnettii)
----------------
Sheep (Ovis aries)
----------------
Chimpanzee (Pan troglodytes)
----------------
Orangutan (Pongo abelii)
----------
-------
Mouse Lemur (Microcebus murinus)
-------------------
Kangaroo rat (Dipodomys ordii)
-------------------
Panda (Ailuropoda melanoleuca)
-------------------
Rat (Rattus norvegicus)
-------------------
Armadillo (Dasypus novemcinctus)
-------------------
Squirrel (Ictidomys tridecemlineatus)
------------------------
Platypus (Ornithorhynchus anatinus)
----------
-------
Zebra Finch (Taeniopygia guttata)
-------------------
Chinese softshell turtle (Pelodiscus sinensis)
-------------------
Duck (Anas platyrhynchos)
------------------------
-
Chicken (Gallus gallus)
-
-------
-------
Flycatcher (Ficedula albicollis)
-------------------
Turkey (Meleagris gallopavo)
-------------------
Anole Lizard (Anolis carolinensis)
--------------------------------
X.tropicalis (Xenopus tropicalis)
---------------------------------
Coelacanth (Latimeria chalumnae)
----------
----
Cave fish (Astyanax mexicanus)
----------------
Medaka (Oryzias latipes)
----------------
Platyfish (Xiphophorus maculatus)
----------------
Tetraodon (Tetraodon nigroviridis)
----------------
-
Tilapia (Oreochromis niloticus)
----------
----------
Stickleback (Gasterosteus aculeatus)
--------------------------------
----
Cod (Gadus morhua)
-------------------
Fugu (Takifugu rubripes)
-------
----------
Zebrafish (Danio rerio)
-----------------
Spotted gar (Lepisosteus oculatus)
--------------------------------------
Lamprey (Petromyzon marinus)
-----------------------------------
-
C.intestinalis (Ciona intestinalis)
-------
C.savignyi (Ciona savignyi)
--------------------------------------------
S.cerevisiae (Saccharomyces cerevisiae)