Transcript: ENST00000586040.1 SMAD2-004

Description

SMAD family member 2 [Source:HGNC Symbol;Acc:6768]

Gene Synonyms

JV18, JV18-1, MADH2, MADR2, hMAD-2, hSMAD2

Location

Chromosome 18: 45,367,596-45,423,182 reverse strand.

About this transcript

This transcript has 9 exons, is annotated with 15 domains and features, is associated with 31163 variant alleles and maps to 471 oligo probes.

Gene

This transcript is a product of gene ENSG00000175387.11 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000402690.2	SMAD2-002	12075	467aa	ENSP00000384449.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS11934	K7EJX0 K7EL92 K7ERC7 K7ESI8 Q15796 Q53XR6	NM_001003652.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000262160.6	SMAD2-001	11932	467aa	ENSP00000262160.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS11934	K7EJX0 K7EL92 K7ERC7 K7ESI8 Q15796 Q53XR6	NM_005901.5	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000356825.4	SMAD2-201	10444	437aa	ENSP00000349282.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q15796	NM_001135937.2	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000586040.1	SMAD2-004	1971	437aa	ENSP00000466193.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q15796	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000591214.1	SMAD2-003	1714	431aa	ENSP00000467075.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B7Z5N5	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000587269.1	SMAD2-008	1042	217aa	ENSP00000466254.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		K7EJX0 K7EL92 K7ERC7 K7ESI8	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000586514.1	SMAD2-005	828	217aa	ENSP00000465355.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		K7EJX0 K7EL92 K7ERC7 K7ESI8	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000585978.1	SMAD2-009	663	108aa	ENSP00000468732.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		K7ESI8	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000587421.1	SMAD2-007	575	137aa	ENSP00000468202.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		K7EL92 K7ERC7 K7ESI8	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000589877.1	SMAD2-006	527	109aa	ENSP00000465971.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		K7EL92 K7ESI8	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000587353.1	SMAD2-011	584	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000586487.1	SMAD2-010	551	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-

Summary

Statistics

Exons: 9, Coding exons: 9, Transcript length: 1,971 bps, Translation length: 437 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q15796

Version

ENST00000586040.1

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000450572 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000586040.1 SMAD2-004

Summary