Transcript: ENST00000580223.1 OTOP2-001

Description

otopetrin 2 [Source:HGNC Symbol;Acc:19657]

Location

About this transcript

This transcript has 6 exons, is annotated with 21 domains and features, is associated with 4689 variant alleles and maps to 241 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000331427.4	OTOP2-201	2147	562aa	ENSP00000332528.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS11708	Q7RTS6	NM_178160.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000580223.1	OTOP2-001	2086	562aa	ENSP00000463837.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS11708	Q7RTS6	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000584711.1	OTOP2-003	1365	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 6, Coding exons: 6, Transcript length: 2,086 bps, Translation length: 562 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q7RTS6

CCDS

This transcript is a member of the Human CCDS set: CCDS11708

Version

ENST00000580223.1

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000445306 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.