Transcript: ENST00000571133.1 RSL1D1-001

Description

ribosomal L1 domain containing 1 [Source:HGNC Symbol;Acc:24534]

Gene Synonyms

CATX11, CSIG, DKFZP564M182, L12, PBK1, UTP30

Location

Chromosome 16: 11,929,056-11,945,442 reverse strand.

About this transcript

This transcript has 9 exons, is annotated with 10 domains and features, is associated with 10160 variant alleles and maps to 609 oligo probes.

Gene

This transcript is a product of gene ENSG00000171490.8 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000571133.1	RSL1D1-001	4134	490aa	ENSP00000460871.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS10551	B4DJ58 I3L234 O76021	NM_015659.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000542106.1	RSL1D1-201	1470	270aa	ENSP00000442089.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B4DJ58	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000355674.5	RSL1D1-002	1323	430aa	ENSP00000347897.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0PJ61 I3L234 J3QSV6	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000573251.1	RSL1D1-011	894	296aa	ENSP00000460748.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		I3L234 I3L3U9	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000573791.1	RSL1D1-008	520	98aa	ENSP00000459331.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		I3L234	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000571988.1	RSL1D1-009	509	158aa	ENSP00000460343.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		I3L234 I3L3C4	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000396503.3	RSL1D1-003	1470	39aa	ENSP00000379760.3	Nonsense mediated decay		J3KPU7	-	-
ENST00000570767.1	RSL1D1-007	871	43aa	ENSP00000459622.1	Nonsense mediated decay		I3L2F2	-	-
ENST00000573029.1	RSL1D1-005	766	46aa	ENSP00000461513.1	Nonsense mediated decay		I3L4T8	-	-
ENST00000572090.1	RSL1D1-004	759	93aa	ENSP00000458684.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000573618.1	RSL1D1-006	710	47aa	ENSP00000459207.1	Nonsense mediated decay		I3L1Y4	-	-
ENST00000574823.1	RSL1D1-012	576	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000574287.1	RSL1D1-010	485	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 9, Coding exons: 9, Transcript length: 4,134 bps, Translation length: 490 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: O76021

CCDS

This transcript is a member of the Human CCDS set: CCDS10551

Version

ENST00000571133.1

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000252059 (version 2)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000571133.1 RSL1D1-001

Summary