Transcript: ENST00000565224.1 SMG1-003

Description

SMG1 phosphatidylinositol 3-kinase-related kinase [Source:HGNC Symbol;Acc:30045]

Gene Synonyms

61E3.4, ATX, BOLA2A, KIAA0421, LIP, My016

Location

Chromosome 16: 18,886,930-18,911,366 reverse strand.

About this transcript

This transcript has 13 exons, is annotated with 10 domains and features, is associated with 11987 variant alleles and maps to 1531 oligo probes.

Gene

This transcript is a product of gene ENSG00000157106.12 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000446231.2	SMG1-001	16115	3661aa	ENSP00000402515.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS45430	H3BPS6 Q96Q15	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000389467.3	SMG1-201	16068	3662aa	ENSP00000374118.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H3BPS6 I3L0C1	NM_015092.4	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000565324.1	SMG1-005	12465	3551aa	ENSP00000456259.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		J3KRA9	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000563235.1	SMG1-006	2910	853aa	ENSP00000455861.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000561947.1	SMG1-004	2664	551aa	ENSP00000460854.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000565224.1	SMG1-003	2372	607aa	ENSP00000458380.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E9PNP6 H3BPS6 H3BR09 I3L0W2	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000532700.2	SMG1-002	1259	335aa	ENSP00000432825.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E9PNP6 H3BPS6 H3BR09	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000563836.1	SMG1-015	565	56aa	ENSP00000456025.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H3BR09	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000569122.1	SMG1-013	562	62aa	ENSP00000455453.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H3BPS6	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000568038.1	SMG1-009	1210	321aa	ENSP00000458558.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000567737.1	SMG1-014	721	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000566328.1	SMG1-017	531	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000569764.1	SMG1-010	4187	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000568239.1	SMG1-007	2978	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000563448.1	SMG1-012	2016	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000561940.1	SMG1-016	964	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000562668.1	SMG1-018	449	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 13, Coding exons: 13, Transcript length: 2,372 bps, Translation length: 607 residues

Version

ENST00000565224.1

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000435800 (version 2)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

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All species

Recent locations

Transcript: ENST00000565224.1 SMG1-003

Summary