Transcript: ENST00000557644.1 NEDD1-003

Description

neural precursor cell expressed, developmentally down-regulated 1 [Source:HGNC Symbol;Acc:7723]

Gene Synonyms

GCP-WD, TUBGCP7

Location

Chromosome 12: 97,301,244-97,346,048 forward strand.

About this transcript

This transcript has 15 exons, is annotated with 18 domains and features, is associated with 19765 variant alleles and maps to 423 oligo probes.

Gene

This transcript is a product of gene ENSG00000139350.7 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000557644.1	NEDD1-003	2367	667aa	ENSP00000451211.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS44955	G3V2M9 G3V2V3 G3V3F1 G3V4I9 G3V4L2	NM_001135175.1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000266742.4	NEDD1-001	3620	660aa	ENSP00000266742.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS9063	G3V2M9 G3V4I9 G3V4L2 Q8NHV4	NM_152905.3	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000429527.2	NEDD1-004	3366	660aa	ENSP00000404978.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS9063	G3V2M9 G3V4I9 G3V4L2 Q8NHV4	NM_001135176.1	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000457368.2	NEDD1-005	3162	571aa	ENSP00000407964.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS44956	G3V4I9 Q8NHV4	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000411739.2	NEDD1-002	2490	571aa	ENSP00000411307.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS44956	G3V4I9 Q8NHV4	NM_001135177.1	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000557478.1	NEDD1-006	595	164aa	ENSP00000451869.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		G3V2M9 G3V4L2	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000554226.1	NEDD1-007	582	167aa	ENSP00000450881.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		G3V2M9 G3V2V3	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000553609.1	NEDD1-011	581	160aa	ENSP00000451830.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		G3V4I9	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000557092.1	NEDD1-008	554	100aa	ENSP00000450757.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		G3V2M9	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000555806.1	NEDD1-009	565	81aa	ENSP00000450828.1	Nonsense mediated decay		G3V2S2	-	-
ENST00000555114.1	NEDD1-010	731	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000557400.1	NEDD1-013	604	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000557454.1	NEDD1-012	564	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-

Summary

Statistics

Exons: 15, Coding exons: 15, Transcript length: 2,367 bps, Translation length: 667 residues

CCDS

This transcript is a member of the Human CCDS set: CCDS44955

Version

ENST00000557644.1

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000409803 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

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Transcript: ENST00000557644.1 NEDD1-003

Summary