Transcript: ENST00000545679.1 CCDC53-002

Description

coiled-coil domain containing 53 [Source:HGNC Symbol;Acc:24256]

Gene Synonyms

CGI-116

Location

Chromosome 12: 102,406,720-102,455,857 reverse strand.

About this transcript

This transcript has 7 exons, is annotated with 5 domains and features, is associated with 18521 variant alleles and maps to 275 oligo probes.

Gene

This transcript is a product of gene ENSG00000120860.6 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000240079.6	CCDC53-001	916	194aa	ENSP00000240079.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS44959	F5H0A7 Q9Y3C0	NM_016053.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000545679.1	CCDC53-002	865	193aa	ENSP00000443857.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F5GZ97 F5H0A7	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000542923.1	CCDC53-012	477	107aa	ENSP00000443922.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H0YGN0	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000544341.1	CCDC53-003	945	173aa	ENSP00000440134.1	Nonsense mediated decay		F5GXZ7 F5H0A7	-	-
ENST00000535501.1	CCDC53-004	921	61aa	ENSP00000440139.1	Nonsense mediated decay		F5GXZ4 F5H0A7	-	-
ENST00000538761.1	CCDC53-010	886	50aa	ENSP00000438122.1	Nonsense mediated decay		F5H0A7	-	-
ENST00000540536.1	CCDC53-007	883	169aa	ENSP00000441810.1	Nonsense mediated decay		F5GWI9 F5H0A7	-	-
ENST00000500685.2	CCDC53-006	588	77aa	ENSP00000445501.1	Nonsense mediated decay		F5H0A7 F5H2P1	-	-
ENST00000539515.1	CCDC53-005	688	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000536930.1	CCDC53-011	289	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000536197.1	CCDC53-013	879	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000326351.7	CCDC53-008	843	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000541569.1	CCDC53-009	569	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 7, Coding exons: 7, Transcript length: 865 bps, Translation length: 193 residues

Version

ENST00000545679.1

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000398688 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000545679.1 CCDC53-002

Summary