Transcript: ENST00000543091.1 LRP6-004

Description

low density lipoprotein receptor-related protein 6 [Source:HGNC Symbol;Acc:6698]

Gene Synonyms

ADCAD2

Location

Chromosome 12: 12,274,027-12,419,703 reverse strand.

About this transcript

This transcript has 23 exons, is annotated with 100 domains and features, is associated with 66542 variant alleles and maps to 569 oligo probes.

Gene

This transcript is a product of gene ENSG00000070018.4 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000261349.4	LRP6-001	10020	1613aa	ENSP00000261349.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS8647	B3KQA9 F5H0Z3 O75581	NM_002336.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000543091.1	LRP6-004	4774	1568aa	ENSP00000442472.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F5H0Z3 F5H7J9	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000540527.1	LRP6-006	593	69aa	ENSP00000443239.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H0YGH0	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000535731.1	LRP6-002	562	75aa	ENSP00000439765.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F5H0Z3	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000538239.1	LRP6-003	7812	1478aa	ENSP00000445083.1	Nonsense mediated decay		B3KQA9 F5H0Z3	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000540415.1	LRP6-005	473	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000545658.1	LRP6-007	435	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 23, Coding exons: 23, Transcript length: 4,774 bps, Translation length: 1,568 residues

Version

ENST00000543091.1

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000400140 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000543091.1 LRP6-004

Summary