Transcript: ENST00000541364.1 TUBA1C-002

Description

tubulin, alpha 1c [Source:HGNC Symbol;Acc:20768]

Gene Synonyms

MGC10851, MGC14580, TUBA6, bcm948

Location

Chromosome 12: 49,621,709-49,667,114 forward strand.

About this transcript

This transcript has 4 exons, is annotated with 37 domains and features, is associated with 20032 variant alleles and maps to 488 oligo probes.

Gene

This transcript is a product of gene ENSG00000167553.10 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000301072.6	TUBA1C-001	1724	449aa	ENSP00000301072.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS8782	F8VRK0 F8VRZ4 F8VWV9 F8VX09 F8VXZ7 Q9BQE3	NM_032704.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000541364.1	TUBA1C-002	1692	519aa	ENSP00000443475.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F5H5D3 F8VRK0 F8VRZ4 F8VWV9 F8VX09 F8VXZ7	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000549183.1	TUBA1C-006	696	130aa	ENSP00000448211.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F8VRK0 F8VS66 F8VWV9 F8VX09 F8VXZ7	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000552448.1	TUBA1C-003	1800	88aa	ENSP00000448646.1	Nonsense mediated decay		F8VRK1	-	-
ENST00000552125.1	TUBA1C-009	575	82aa	ENSP00000447910.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000549818.1	TUBA1C-008	536	88aa	ENSP00000447669.1	Nonsense mediated decay		F8VRK1	-	-
ENST00000550574.1	TUBA1C-004	573	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000549554.1	TUBA1C-005	560	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000548470.1	TUBA1C-007	1105	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 4, Coding exons: 4, Transcript length: 1,692 bps, Translation length: 519 residues

Version

ENST00000541364.1

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000404420 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

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Transcript: ENST00000541364.1 TUBA1C-002

Summary