Transcript: ENST00000535391.1 EIF3J-002

Description

eukaryotic translation initiation factor 3, subunit J [Source:HGNC Symbol;Acc:3270]

Gene Synonyms

EIF3S1, eIF3-alpha, eIF3-p35, eIF3j

Location

Chromosome 15: 44,829,381-44,853,645 forward strand.

About this transcript

This transcript has 7 exons, is annotated with 11 domains and features, is associated with 11699 variant alleles and maps to 233 oligo probes.

Gene

This transcript is a product of gene ENSG00000104131.8 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000261868.5	EIF3J-001	2569	258aa	ENSP00000261868.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS10111	O75822	NM_003758.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000424492.3	EIF3J-003	1550	209aa	ENSP00000414548.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS61613	F5H425	NM_001284336.1	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000535391.1	EIF3J-002	925	204aa	ENSP00000440221.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS61612	B4DUI3	NM_001284335.1	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000536248.1	EIF3J-004	533	106aa	ENSP00000443563.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000558353.1	EIF3J-007	1024	117aa	ENSP00000453282.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000558053.1	EIF3J-006	463	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000558227.1	EIF3J-005	362	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 7, Coding exons: 7, Transcript length: 925 bps, Translation length: 204 residues

CCDS

This transcript is a member of the Human CCDS set: CCDS61612

Version

ENST00000535391.1

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000396804 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000535391.1 EIF3J-002

Summary