Transcript: ENST00000533244.1 CCS-001

Description

copper chaperone for superoxide dismutase [Source:HGNC Symbol;Acc:1613]

Location

Chromosome 11: 66,360,292-66,373,490 forward strand.

About this transcript

This transcript has 8 exons, is annotated with 12 domains and features, is associated with 5812 variant alleles and maps to 384 oligo probes.

Gene

This transcript is a product of gene ENSG00000173992.4 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000533244.1	CCS-001	1430	274aa	ENSP00000436318.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS8146	E9PP76 J3KNF4 O14618	NM_005125.1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000310190.4	CCS-009	942	255aa	ENSP00000307870.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E9PP76 J3KNF4	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000534763.1	CCS-007	777	68aa	ENSP00000436379.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E9PP76	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000530961.1	CCS-005	1214	249aa	ENSP00000433609.1	Nonsense mediated decay		E9PK03	-	-
ENST00000530384.1	CCS-002	1196	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000526066.1	CCS-008	872	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000531990.1	CCS-006	868	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000525435.1	CCS-003	798	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000526058.1	CCS-004	593	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 8, Coding exons: 8, Transcript length: 1,430 bps, Translation length: 274 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: O14618

CCDS

This transcript is a member of the Human CCDS set: CCDS8146

Version

ENST00000533244.1

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000393826 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000533244.1 CCS-001

Summary