Transcript: ENST00000531950.1 HHLA3-007

Description

HERV-H LTR-associating 3 [Source:HGNC Symbol;Acc:4906]

Location

Chromosome 1: 70,820,527-70,851,022 forward strand.

About this transcript

This transcript has 3 exons, is associated with 12449 variant alleles and maps to 234 oligo probes.

Gene

This transcript is a product of gene ENSG00000197568.9 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000370940.5	HHLA3-002	775	121aa	ENSP00000359978.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS30752	Q9XRX5	NM_001036646.1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000359875.5	HHLA3-003	898	114aa	ENSP00000352938.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS30753	Q9XRX5	NM_001036645.1	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000432224.1	HHLA3-201	757	154aa	ENSP00000395155.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		J3KQD7	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000361764.4	HHLA3-005	692	76aa	ENSP00000354815.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS649	Q9XRX5	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000531950.1	HHLA3-007	541	114aa	ENSP00000431678.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS30753	Q9XRX5	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000463058.1	HHLA3-001	832	76aa	ENSP00000432048.1	Nonsense mediated decay	CCDS649	Q9XRX5	-	-
ENST00000525653.1	HHLA3-006	689	74aa	ENSP00000434063.1	Nonsense mediated decay		E9PSC4	-	-
ENST00000486110.1	HHLA3-004	473	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-

Summary

Statistics

Exons: 3, Coding exons: 2, Transcript length: 541 bps, Translation length: 114 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q9XRX5

CCDS

This transcript is a member of the Human CCDS set: CCDS30753

Version

ENST00000531950.1

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000388831 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000531950.1 HHLA3-007

Summary