Transcript: ENST00000525634.1 RPS13-001

Description

ribosomal protein S13 [Source:HGNC Symbol;Acc:10386]

Gene Synonyms

RNU14B, S13, U14, U14B

Location

Chromosome 11: 17,095,936-17,099,334 reverse strand.

About this transcript

This transcript has 6 exons, is annotated with 6 domains and features, is associated with 1874 variant alleles and maps to 432 oligo probes.

Gene

This transcript is a product of gene ENSG00000110700.2 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000525634.1	RPS13-001	646	151aa	ENSP00000435777.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS7823	P62277	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000228140.2	RPS13-010	491	148aa	ENSP00000228140.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		J3KMX5	NM_001017.2	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000533969.1	RPS13-007	355	116aa	ENSP00000432096.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E9PS50	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000526895.1	RPS13-002	561	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000527571.1	RPS13-006	777	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000531908.1	RPS13-008	746	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000525828.1	RPS13-005	664	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000531008.1	RPS13-009	594	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000528074.1	RPS13-004	583	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000534329.1	RPS13-003	568	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 6, Coding exons: 6, Transcript length: 646 bps, Translation length: 151 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: P62277

CCDS

This transcript is a member of the Human CCDS set: CCDS7823

Version

ENST00000525634.1

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000387320 (version 2)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000525634.1 RPS13-001

Summary