Transcript: ENST00000512485.1 CNOT6L-005

Description

CCR4-NOT transcription complex, subunit 6-like [Source:HGNC Symbol;Acc:18042]

Gene Synonyms

CCR4B, CCR4b, DKFZp434K098

Location

Chromosome 4: 78,641,384-78,740,769 reverse strand.

About this transcript

This transcript has 12 exons, is annotated with 18 domains and features, is associated with 42389 variant alleles and maps to 390 oligo probes.

Gene

This transcript is a product of gene ENSG00000138767.8 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000264903.4	CNOT6L-201	8794	555aa	ENSP00000264903.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS47082	D6RGK9 Q96LI5	NM_144571.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000504123.1	CNOT6L-001	8843	555aa	ENSP00000424896.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS68731	D6RGK9 Q96LI5	NM_001286790.1	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000515506.1	CNOT6L-004	4024	469aa	ENSP00000423750.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000512485.1	CNOT6L-005	1890	562aa	ENSP00000425571.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H0Y9Z5	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000505983.1	CNOT6L-008	781	260aa	ENSP00000426320.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H0YA76	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000515441.1	CNOT6L-006	572	163aa	ENSP00000426269.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		D6RGK9	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000504804.1	CNOT6L-007	1925	46aa	ENSP00000425836.1	Nonsense mediated decay		D6RIW9	-	-
ENST00000506166.1	CNOT6L-003	781	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000508371.1	CNOT6L-009	700	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 12, Coding exons: 12, Transcript length: 1,890 bps, Translation length: 562 residues

Incomplete CDS

5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete

Version

ENST00000512485.1

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000362519 (version 1)

Favourite species

All species

Recent locations

Transcript: ENST00000512485.1 CNOT6L-005

Summary