Transcript: ENST00000504030.2 HTR3A-001

Description

5-hydroxytryptamine (serotonin) receptor 3A, ionotropic [Source:HGNC Symbol;Acc:5297]

Gene Synonyms

5-HT-3, 5-HT3A, 5-HT3R, 5HT3R, HTR3

Location

Chromosome 11: 113,845,603-113,861,035 forward strand.

About this transcript

This transcript has 9 exons, is annotated with 30 domains and features, is associated with 7807 variant alleles and maps to 552 oligo probes.

Gene

This transcript is a product of gene ENSG00000166736.7 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000355556.2	HTR3A-201	2331	516aa	ENSP00000347754.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS8366	B3VRG0 B3VRG5 B3VRH0 B3VRH5 B3VRI0 B3VRI5 B3VRJ5 B3VRK0 P46098	NM_213621.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000504030.2	HTR3A-001	2432	478aa	ENSP00000424189.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B3VRG0 B3VRG5 B3VRH0 B3VRH5 B3VRI0 B3VRI5 B3VRJ5 B3VRK0 P46098 Q9UEP2	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000375498.2	HTR3A-202	2235	484aa	ENSP00000364648.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS8365	B3VRG0 B3VRG5 B3VRH0 B3VRH5 B3VRI0 B3VRI5 B3VRJ5 B3VRK0 P46098 Q9UEP2	NM_000869.5	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000506841.2	HTR3A-002	2221	510aa	ENSP00000424776.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B3VRG0 B3VRG5 B3VRH0 B3VRH5 B3VRI0 B3VRI5 B3VRJ5 B3VRK0 P46098	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000299961.5	HTR3A-003	1994	463aa	ENSP00000299961.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS53710	B3VRG0 B3VRG5 B3VRH0 B3VRH5 B3VRI0 B3VRI5 B3VRJ5 P46098 Q9UEP2	NM_001161772.2	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000535865.1	HTR3A-203	1385	222aa	ENSP00000437776.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B3VRG0 B3VRG5 Q9UEP2	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000510849.1	HTR3A-004	1385	238aa	ENSP00000423653.1	Nonsense mediated decay		B3VRI0 B3VRI5 B3VRJ5 B3VRK0	-	-
ENST00000502622.1	HTR3A-005	906	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 9, Coding exons: 9, Transcript length: 2,432 bps, Translation length: 478 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: P46098

Version

ENST00000504030.2

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000360822 (version 2)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

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Transcript: ENST00000504030.2 HTR3A-001

Summary