Transcript: ENST00000448060.2 CALML4-003

Description

calmodulin-like 4 [Source:HGNC Symbol;Acc:18445]

Gene Synonyms

CALML4, MGC4809, NY-BR-20

Location

Chromosome 15: 68,484,395-68,497,826 reverse strand.

About this transcript

This transcript has 4 exons, is annotated with 8 domains and features, is associated with 6634 variant alleles and maps to 455 oligo probes.

Gene

This transcript is a product of gene ENSG00000129007.10 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000467889.1	CALML4-001	987	196aa	ENSP00000419081.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS10226	H3BS46 Q96GE6	NM_033429.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000395465.3	CALML4-002	4155	59aa	ENSP00000378848.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q6MZY3	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000448060.2	CALML4-003	2520	149aa	ENSP00000400755.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS42052	Q96GE6	NM_001031733.2	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000540479.1	CALML4-201	1445	120aa	ENSP00000438177.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS66808	H3BS46 Q96GE6	NM_001286694.1	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000354678.3	CALML4-007	611	88aa	ENSP00000456532.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H3BS46	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000478113.1	CALML4-004	3651	29aa	ENSP00000432629.1	Nonsense mediated decay		H3BM27	NM_001286695.1	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000395463.2	CALML4-005	1445	60aa	ENSP00000435285.1	Nonsense mediated decay		H3BM29	-	-
ENST00000467188.1	CALML4-006	620	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 4, Coding exons: 4, Transcript length: 2,520 bps, Translation length: 149 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q96GE6

CCDS

This transcript is a member of the Human CCDS set: CCDS42052

Version

ENST00000448060.2

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Stop codons

This transcript has a variant, rs11071990, that causes a stop codon to be gained in at least 10% of HapMap or 1000 Genome population(s) ESP6500:African_American, CSHL-HAPMAP:HAPMAP-LWK, CSHL-HAPMAP:HAPMAP-ASW, CSHL-HAPMAP:HAPMAP-MKK, CSHL-HAPMAP:HapMap-YRI.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000313446 (version 2)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

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Recent locations

Transcript: ENST00000448060.2 CALML4-003

Summary