Transcript: ENST00000447944.2 PNPT1-001

Description

polyribonucleotide nucleotidyltransferase 1 [Source:HGNC Symbol;Acc:23166]

Gene Synonyms

COXPD13, DFNB70, OLD35, PNPASE, PNPase, old-35

Location

About this transcript

This transcript has 28 exons, is annotated with 28 domains and features, is associated with 31250 variant alleles and maps to 833 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000447944.2	PNPT1-001	4411	783aa	ENSP00000400646.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS1856	Q8TCS8	NM_033109.4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000260604.4	PNPT1-004	3596	179aa	ENSP00000260604.4	Nonsense mediated decay		H7BXF6	-	-
ENST00000415374.1	PNPT1-007	3308	783aa	ENSP00000393953.1	Nonsense mediated decay	CCDS1856	Q8TCS8	-	-
ENST00000429805.1	PNPT1-003	583	71aa	ENSP00000411994.1	Nonsense mediated decay		F8WBI3	-	-
ENST00000415489.1	PNPT1-008	555	139aa	ENSP00000411057.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000481066.1	PNPT1-005	1281	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 28, Coding exons: 28, Transcript length: 4,411 bps, Translation length: 783 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q8TCS8

CCDS

This transcript is a member of the Human CCDS set: CCDS1856

Version

ENST00000447944.2

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000251481 (version 2)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.