Transcript: ENST00000447906.2 OTUD4-004

Description

OTU domain containing 4 [Source:HGNC Symbol;Acc:24949]

Gene Synonyms

DUBA6, HIN1, HSHIN1, KIAA1046

Location

Chromosome 4: 146,058,286-146,101,313 reverse strand.

About this transcript

This transcript has 21 exons, is annotated with 12 domains and features, is associated with 19473 variant alleles and maps to 631 oligo probes.

Gene

This transcript is a product of gene ENSG00000164164.11 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000454497.2	OTUD4-001	7069	1049aa	ENSP00000409279.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS47139	D6RA27 Q01804	NM_001102653.1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000447906.2	OTUD4-004	3829	1114aa	ENSP00000395487.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		D6RA27 G3V0I6	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000514973.1	OTUD4-010	1255	372aa	ENSP00000425972.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		D6RA27 D6RI06	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000296579.6	OTUD4-201	938	145aa	ENSP00000296579.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS3764	D6RA27 Q01804	NM_017493.6	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000509620.2	OTUD4-002	864	145aa	ENSP00000424192.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS3764	D6RA27 Q01804	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000504501.1	OTUD4-003	543	139aa	ENSP00000423453.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		D6RA27	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000455611.2	OTUD4-009	2498	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000505976.1	OTUD4-005	671	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000504331.1	OTUD4-007	591	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000509985.1	OTUD4-008	467	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000509517.1	OTUD4-006	617	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 21, Coding exons: 21, Transcript length: 3,829 bps, Translation length: 1,114 residues

Version

ENST00000447906.2

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000365117 (version 2)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000447906.2 OTUD4-004

Summary