Transcript: ENST00000424880.2 SEC61A1-003

Description

Sec61 alpha 1 subunit (S. cerevisiae) [Source:HGNC Symbol;Acc:18276]

Gene Synonyms

HSEC61, SEC61, SEC61A

Location

Chromosome 3: 127,771,602-127,790,520 forward strand.

About this transcript

This transcript has 8 exons, is annotated with 14 domains and features, is associated with 8186 variant alleles and maps to 471 oligo probes.

Gene

This transcript is a product of gene ENSG00000058262.5 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000243253.3	SEC61A1-001	3635	476aa	ENSP00000243253.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS3046	B3KME8 B3KNF6 B3KNG2 C9JXC6 P61619	NM_013336.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000424880.2	SEC61A1-003	3238	356aa	ENSP00000411445.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B3KME8 B3KNG2 P61619	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000464451.1	SEC61A1-002	1871	482aa	ENSP00000418493.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B3KME8 B3KNG2 B4DR61 C9JXC6	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000481210.1	SEC61A1-005	521	101aa	ENSP00000419172.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JXC6	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000483956.1	SEC61A1-004	3046	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000498837.1	SEC61A1-007	555	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000491668.1	SEC61A1-006	558	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 8, Coding exons: 7, Transcript length: 3,238 bps, Translation length: 356 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: P61619

Version

ENST00000424880.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000356554 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000424880.2 SEC61A1-003

Summary