Transcript: ENST00000409798.1 NUP35-002

Description

nucleoporin 35kDa [Source:HGNC Symbol;Acc:29797]

Gene Synonyms

MP-44, MP44, NP44, NUP53

Location

Chromosome 2: 183,982,242-184,026,166 forward strand.

About this transcript

This transcript has 10 exons, is annotated with 5 domains and features, is associated with 19725 variant alleles and maps to 429 oligo probes.

Gene

This transcript is a product of gene ENSG00000163002.8 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000295119.4	NUP35-001	1633	326aa	ENSP00000295119.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS2290	B4DP57 B4DYB4 C9IYQ7 C9JIY9 C9JWU7 Q8NFH5	NM_138285.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000541912.1	NUP35-201	1624	191aa	ENSP00000442019.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B4DP57	NM_001287585.1	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000409798.1	NUP35-002	1470	309aa	ENSP00000387305.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B4DP57 B4DYB4 C9IYQ7 C9JIY9 C9JWU7	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000442895.2	NUP35-005	616	76aa	ENSP00000403819.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JIY9 C9JWU7	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000446612.1	NUP35-006	470	115aa	ENSP00000412554.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9IYQ7 C9JIY9 C9JWU7	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000455063.1	NUP35-008	342	53aa	ENSP00000393130.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JWU7	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000374930.3	NUP35-004	998	152aa	ENSP00000364066.3	Nonsense mediated decay		C9IYQ7 C9JIY9 C9JWU7 F8WEL4	-	-
ENST00000452137.1	NUP35-010	755	136aa	ENSP00000412311.1	Nonsense mediated decay		C9JIY9 C9JWU7 F8WCF5	-	-
ENST00000497330.1	NUP35-009	544	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000479162.1	NUP35-003	2828	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000472844.1	NUP35-007	514	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 10, Coding exons: 8, Transcript length: 1,470 bps, Translation length: 309 residues

Version

ENST00000409798.1

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000334518 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

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Transcript: ENST00000409798.1 NUP35-002

Summary