Transcript: ENST00000404141.1 PAXIP1-001

Description

PAX interacting (with transcription-activation domain) protein 1 [Source:HGNC Symbol;Acc:8624]

Gene Synonyms

CAGF28, CAGF29, PACIP1, PAXIP1L, PTIP, TNRC2

Location

Chromosome 7: 154,735,397-154,794,794 reverse strand.

About this transcript

This transcript has 21 exons, is annotated with 34 domains and features, is associated with 24585 variant alleles and maps to 745 oligo probes.

Gene

This transcript is a product of gene ENSG00000157212.14 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000404141.1	PAXIP1-001	3827	1069aa	ENSP00000384048.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS47753	Q6ZW49	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000397192.1	PAXIP1-201	3711	1069aa	ENSP00000380376.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q6ZW49	NM_007349.3	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000419436.1	PAXIP1-007	521	173aa	ENSP00000389849.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H7BZI8	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000457196.1	PAXIP1-006	3990	147aa	ENSP00000392011.1	Nonsense mediated decay		F8WC23	-	-
ENST00000473219.1	PAXIP1-002	5515	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000494182.1	PAXIP1-008	548	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000464717.1	PAXIP1-005	3792	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000475066.1	PAXIP1-003	2477	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000485730.1	PAXIP1-009	526	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 21, Coding exons: 21, Transcript length: 3,827 bps, Translation length: 1,069 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q6ZW49

CCDS

This transcript is a member of the Human CCDS set: CCDS47753

Version

ENST00000404141.1

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000322223 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

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Recent locations

Transcript: ENST00000404141.1 PAXIP1-001

Summary