Transcript: ENST00000403750.1 PPARGC1B-002

Description

peroxisome proliferator-activated receptor gamma, coactivator 1 beta [Source:HGNC Symbol;Acc:30022]

Gene Synonyms

ERRL1, PERC, PGC-1(beta), PGC1, PGC1B, PPARGC1

Location

Chromosome 5: 149,151,503-149,227,190 forward strand.

About this transcript

This transcript has 11 exons, is annotated with 14 domains and features, is associated with 32525 variant alleles and maps to 400 oligo probes.

Gene

This transcript is a product of gene ENSG00000155846.12 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000309241.5	PPARGC1B-001	10568	1023aa	ENSP00000312649.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS4298	Q86YN6	NM_133263.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000394320.3	PPARGC1B-003	4803	1017aa	ENSP00000377855.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q86YN6	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000403750.1	PPARGC1B-002	3146	959aa	ENSP00000384403.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS54934	Q86YN6	NM_001172699.1	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000360453.4	PPARGC1B-005	3004	984aa	ENSP00000353638.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS54933	Q86YN6	NM_001172698.1	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000434684.1	PPARGC1B-004	2457	748aa	ENSP00000409364.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000461780.1	PPARGC1B-006	566	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000492495.1	PPARGC1B-008	572	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 11, Coding exons: 11, Transcript length: 3,146 bps, Translation length: 959 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q86YN6

CCDS

This transcript is a member of the Human CCDS set: CCDS54934

Version

ENST00000403750.1

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000319316 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000403750.1 PPARGC1B-002

Summary