Transcript: ENST00000403027.2 CNOT8-010

Description

CCR4-NOT transcription complex, subunit 8 [Source:HGNC Symbol;Acc:9207]

Gene Synonyms

CAF1, CALIF, Caf1b, POP2, hCAF1

Location

Chromosome 5: 154,238,077-154,256,352 forward strand.

About this transcript

This transcript has 7 exons, is annotated with 5 domains and features, is associated with 7962 variant alleles and maps to 639 oligo probes.

Gene

This transcript is a product of gene ENSG00000155508.9 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000517876.1	CNOT8-006	2708	292aa	ENSP00000430493.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS4329	B0AZS3 B7Z5Z0 B7Z9U0 E5RFJ4 E5RGE4 E5RHG0 E5RIU0 E5RJC5 E5RK92 Q9UFF9	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000403027.2	CNOT8-010	2604	292aa	ENSP00000384747.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS4329	B0AZS3 B7Z5Z0 B7Z9U0 E5RFJ4 E5RGE4 E5RHG0 E5RIU0 E5RJC5 E5RK92 Q9UFF9	NM_004779.4	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000285896.6	CNOT8-001	2528	292aa	ENSP00000285896.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS4329	B0AZS3 B7Z5Z0 B7Z9U0 E5RFJ4 E5RGE4 E5RHG0 E5RIU0 E5RJC5 E5RK92 Q9UFF9	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000521450.1	CNOT8-005	1158	186aa	ENSP00000431034.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B0AZS3 B7Z9U0 E5RIU0	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000521583.1	CNOT8-008	1151	186aa	ENSP00000429882.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B0AZS3 B7Z9U0 E5RIU0	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000519404.1	CNOT8-003	945	238aa	ENSP00000430833.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B7Z8R1 B7Z9U0 E5RFJ4 E5RHG0 E5RHP3 E5RIL2	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000520671.1	CNOT8-007	923	186aa	ENSP00000428305.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B0AZS3 B7Z9U0 E5RIU0	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000518775.1	CNOT8-024	920	225aa	ENSP00000429394.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E5RFJ4 E5RHG0 E5RHP3 E5RIL2	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000520472.1	CNOT8-011	912	132aa	ENSP00000430215.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E5RFJ4 E5RGE4 E5RHG0 E5RJC5 E5RK92	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000524105.1	CNOT8-002	904	128aa	ENSP00000429576.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B7Z9U0	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000523698.1	CNOT8-004	862	186aa	ENSP00000428565.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B0AZS3 B7Z9U0 E5RIU0	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000517568.1	CNOT8-015	692	118aa	ENSP00000428090.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E5RFJ4 E5RHG0 E5RK92	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000519903.1	CNOT8-012	648	85aa	ENSP00000428359.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E5RIU0	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000522458.1	CNOT8-014	623	121aa	ENSP00000428550.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E5RFJ4 E5RHG0 E5RHP3	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000519211.1	CNOT8-013	620	118aa	ENSP00000429108.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E5RFJ4 E5RHG0 E5RJC5 E5RK92	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000519430.1	CNOT8-019	562	55aa	ENSP00000429310.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E5RHG0	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000518028.1	CNOT8-018	516	55aa	ENSP00000429810.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E5RHG0	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000519394.1	CNOT8-021	500	90aa	ENSP00000428842.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E5RFJ4 E5RHG0	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000521729.1	CNOT8-009	1068	52aa	ENSP00000428600.1	Nonsense mediated decay		E5RHD6	-	-
ENST00000522644.1	CNOT8-023	1027	117aa	ENSP00000428576.1	Nonsense mediated decay		E5RFJ4 E5RHG0 E5RHL9	-	-
ENST00000521402.1	CNOT8-020	596	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000523270.1	CNOT8-016	575	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000518782.1	CNOT8-017	550	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000521174.1	CNOT8-025	485	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000522139.1	CNOT8-022	566	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 7, Coding exons: 6, Transcript length: 2,604 bps, Translation length: 292 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q9UFF9

CCDS

This transcript is a member of the Human CCDS set: CCDS4329

Version

ENST00000403027.2

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000377455 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000403027.2 CNOT8-010

Summary