Transcript: ENST00000402506.1 LFNG-003

Description

LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase [Source:HGNC Symbol;Acc:6560]

Gene Synonyms

SCDO3

Location

Chromosome 7: 2,552,163-2,568,061 forward strand.

About this transcript

This transcript has 9 exons, is annotated with 3 domains and features, is associated with 9661 variant alleles and maps to 476 oligo probes.

Gene

This transcript is a product of gene ENSG00000106003.8 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000222725.5	LFNG-001	2377	379aa	ENSP00000222725.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS34587	Q8NES3	NM_001040167.1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000402506.1	LFNG-003	2268	308aa	ENSP00000385764.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS55081	Q8NES3	NM_001166355.1	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000402045.1	LFNG-004	2058	250aa	ENSP00000384786.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS55082	Q8NES3	NM_002304.2	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000338732.3	LFNG-201	1968	250aa	ENSP00000343095.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS55082	Q8NES3	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000359574.3	LFNG-002	1377	361aa	ENSP00000352579.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS34586	Q8NES3	NM_001040168.1	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000493850.1	LFNG-005	804	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 9, Coding exons: 9, Transcript length: 2,268 bps, Translation length: 308 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q8NES3

CCDS

This transcript is a member of the Human CCDS set: CCDS55081

Version

ENST00000402506.1

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000325023 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

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Recent locations

Transcript: ENST00000402506.1 LFNG-003

Summary