Transcript: ENST00000401396.1 ICA1-006

Description

islet cell autoantigen 1, 69kDa [Source:HGNC Symbol;Acc:5343]

Gene Synonyms

ICA1, ICA69, ICAp69

Location

Chromosome 7: 8,153,409-8,276,524 reverse strand.

About this transcript

This transcript has 14 exons, is annotated with 9 domains and features, is associated with 57855 variant alleles and maps to 522 oligo probes.

Gene

This transcript is a product of gene ENSG00000003147.13 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000402384.3	ICA1-001	2458	483aa	ENSP00000385570.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS34602	C9J3Y4 F8WET5 Q05084 Q9UDQ6	NM_001136020.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000406470.2	ICA1-201	2383	483aa	ENSP00000385651.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS34602	C9J3Y4 F8WET5 Q05084 Q9UDQ6	NM_004968.3	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000265577.7	ICA1-002	2309	482aa	ENSP00000265577.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS64595	C9IZC7 C9J8Y3 Q96HG3 Q9UDQ6	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000396675.3	ICA1-007	2133	483aa	ENSP00000379908.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS34602	C9J3Y4 F8WET5 Q05084 Q9UDQ6	NM_022307.2	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000401396.1	ICA1-006	1742	471aa	ENSP00000385305.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B9ZVM7 E9PDL4 Q9UDQ6	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000407906.1	ICA1-003	1615	350aa	ENSP00000386021.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9J3Y4 E7ENI6 F8WET5	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000422063.2	ICA1-202	1539	512aa	ENSP00000403982.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9J3Y4 F8WET5 Q05084 Q9UDQ6	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000317367.5	ICA1-008	946	256aa	ENSP00000316074.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B9ZVM7	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000447326.1	ICA1-011	604	162aa	ENSP00000398435.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9J3Y4 F8WET5	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000430867.1	ICA1-009	551	134aa	ENSP00000397496.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9IZC7 C9J8Y3	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000446305.1	ICA1-012	539	70aa	ENSP00000406722.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9IZC7	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000455539.1	ICA1-005	1956	87aa	ENSP00000410341.1	Nonsense mediated decay		F8WET5 Q6LCT9	-	-
ENST00000339809.6	ICA1-004	1415	257aa	ENSP00000341603.6	Nonsense mediated decay		C9J3Y4 F8WET5 Q6LCR0	-	-
ENST00000457755.1	ICA1-014	530	85aa	ENSP00000393314.1	Nonsense mediated decay		F8WET5	-	-
ENST00000476942.1	ICA1-015	411	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000486677.1	ICA1-010	322	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000470696.1	ICA1-013	800	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000490041.1	ICA1-016	477	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 14, Coding exons: 13, Transcript length: 1,742 bps, Translation length: 471 residues

Version

ENST00000401396.1

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000324807 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000401396.1 ICA1-006

Summary