Transcript: ENST00000396094.2 ODAM-001

Description

odontogenic, ameloblast asssociated [Source:HGNC Symbol;Acc:26043]

Gene Synonyms

APIN, APin, FLJ20513

Location

About this transcript

This transcript has 11 exons, is annotated with 8 domains and features, is associated with 3761 variant alleles and maps to 410 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000396094.2	ODAM-001	1319	279aa	ENSP00000379401.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS3536	A1E959	NM_017855.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000510709.2	ODAM-002	780	253aa	ENSP00000423070.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		D6RA81	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000514097.1	ODAM-005	680	216aa	ENSP00000426106.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H0YA46	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000510847.1	ODAM-004	605	30aa	ENSP00000422100.1	Nonsense mediated decay		H0Y8T7	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000506248.1	ODAM-003	554	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 11, Coding exons: 10, Transcript length: 1,319 bps, Translation length: 279 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: A1E959

CCDS

This transcript is a member of the Human CCDS set: CCDS3536

Version

ENST00000396094.2

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000251562 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.