Transcript: ENST00000395693.3 SCO2-001

Description

SCO2 cytochrome c oxidase assembly protein [Source:HGNC Symbol;Acc:10604]

Gene Synonyms

CEMCOX1, MYP6, SCO1L

Location

Chromosome 22: 50,961,997-50,964,035 reverse strand.

About this transcript

This transcript has 2 exons, is annotated with 9 domains and features, is associated with 1780 variant alleles and maps to 231 oligo probes.

Gene

This transcript is a product of gene ENSG00000130489.8 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000543927.1	SCO2-202	1051	266aa	ENSP00000444433.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS14095	C9JBU1 O43819	NM_001169109.1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000535425.1	SCO2-201	1002	266aa	ENSP00000444242.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS14095	C9JBU1 O43819	NM_001169110.1	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000395693.3	SCO2-001	992	266aa	ENSP00000379046.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS14095	C9JBU1 O43819	NM_005138.2	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000252785.3	SCO2-002	992	266aa	ENSP00000252785.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS14095	C9JBU1 O43819	NM_001169111.1	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000423348.1	SCO2-003	617	136aa	ENSP00000403570.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JBU1	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000439934.1	SCO2-004	568	136aa	ENSP00000415642.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JBU1	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,

Summary

Statistics

Exons: 2, Coding exons: 1, Transcript length: 992 bps, Translation length: 266 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: O43819

CCDS

This transcript is a member of the Human CCDS set: CCDS14095

Version

ENST00000395693.3

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000317090 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000395693.3 SCO2-001

Summary