Transcript: ENST00000395111.3 NFIC-003

Description

nuclear factor I/C (CCAAT-binding transcription factor) [Source:HGNC Symbol;Acc:7786]

Gene Synonyms

CTF, CTF5, NF-I, NFI

Location

Chromosome 19: 3,359,645-3,463,140 forward strand.

About this transcript

This transcript has 10 exons, is annotated with 11 domains and features, is associated with 55282 variant alleles and maps to 487 oligo probes.

Gene

This transcript is a product of gene ENSG00000141905.13 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000443272.2	NFIC-006	1716	508aa	ENSP00000396843.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS59330	P08651	NM_001245002.1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000589123.1	NFIC-001	8068	499aa	ENSP00000465655.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS45914	P08651	NM_205843.2	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000346156.5	NFIC-201	2175	406aa	ENSP00000301935.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding		P08651	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000395111.3	NFIC-003	1755	430aa	ENSP00000378543.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS58640	P08651	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000341919.3	NFIC-004	1573	428aa	ENSP00000342194.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS12107	P08651	NM_005597.3	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000590282.1	NFIC-005	1558	439aa	ENSP00000466647.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS59331	P08651	NM_001245004.1	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000586919.1	NFIC-011	1221	406aa	ENSP00000465177.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		P08651	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000588839.1	NFIC-007	625	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000589164.1	NFIC-009	435	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000589537.1	NFIC-010	977	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000589969.1	NFIC-008	614	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 10, Coding exons: 9, Transcript length: 1,755 bps, Translation length: 430 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: P08651

CCDS

This transcript is a member of the Human CCDS set: CCDS58640

Version

ENST00000395111.3

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000452830 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000395111.3 NFIC-003

Summary