Transcript: ENST00000395003.1 JADE2-002

Description

jade family PHD finger 2 [Source:HGNC Symbol;Acc:22984]

Gene Synonyms

JADE-2, JADE2, KIAA0239, PHF15

Location

Chromosome 5: 133,861,798-133,918,918 forward strand.

About this transcript

This transcript has 11 exons, is annotated with 17 domains and features, is associated with 26202 variant alleles and maps to 755 oligo probes.

Gene

This transcript is a product of gene ENSG00000043143.16 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000395003.1	JADE2-002	6463	790aa	ENSP00000378451.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS4176	C9J929 D6R9B8 Q9NQC1	NM_015288.4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000361895.2	JADE2-001	3212	791aa	ENSP00000354425.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9J929 D3DQA3 D6R9B8	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000402835.1	JADE2-007	2797	509aa	ENSP00000384671.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B5MBX1 C9J929 D6R9B8	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000282605.4	JADE2-003	2748	834aa	ENSP00000282605.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B3KPL2 C9J929 D6R9B8 G3XAA4	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000431355.1	JADE2-008	887	255aa	ENSP00000406189.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9J929 D6R9B8	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000512386.1	JADE2-011	567	149aa	ENSP00000422991.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		D6R9B8	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000430087.1	JADE2-006	1256	47aa	ENSP00000396026.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000515554.1	JADE2-010	549	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000453515.1	JADE2-009	548	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000470876.1	JADE2-004	2997	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 11, Coding exons: 10, Transcript length: 6,463 bps, Translation length: 790 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q9NQC1

CCDS

This transcript is a member of the Human CCDS set: CCDS4176

Version

ENST00000395003.1

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000251169 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000395003.1 JADE2-002

Summary