Transcript: ENST00000392770.2 SCN3B-001

Description

sodium channel, voltage-gated, type III, beta subunit [Source:HGNC Symbol;Acc:20665]

Gene Synonyms

HSA243396, KIAA1158, SCNB3

Location

Chromosome 11: 123,499,897-123,525,312 reverse strand.

About this transcript

This transcript has 6 exons, is annotated with 10 domains and features, is associated with 10934 variant alleles and maps to 508 oligo probes.

Gene

This transcript is a product of gene ENSG00000166257.4 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000392770.2	SCN3B-001	6061	215aa	ENSP00000376523.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS8442	E9PJP6 E9PQS8 Q9NY72	NM_018400.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000299333.3	SCN3B-201	5665	215aa	ENSP00000299333.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS8442	E9PJP6 E9PQS8 Q9NY72	NM_001040151.1	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000530277.1	SCN3B-002	3984	215aa	ENSP00000432785.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS8442	E9PJP6 E9PQS8 Q9NY72	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000527836.1	SCN3B-004	566	141aa	ENSP00000435554.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E9PJP6 E9PQS8	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000528267.1	SCN3B-003	443	93aa	ENSP00000434363.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E9PQS8	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000527125.1	SCN3B-005	3289	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 6, Coding exons: 5, Transcript length: 6,061 bps, Translation length: 215 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q9NY72

CCDS

This transcript is a member of the Human CCDS set: CCDS8442

Version

ENST00000392770.2

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000387412 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

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Recent locations

Transcript: ENST00000392770.2 SCN3B-001

Summary