Transcript: ENST00000381431.5 SGCB-001

Description

sarcoglycan, beta (43kDa dystrophin-associated glycoprotein) [Source:HGNC Symbol;Acc:10806]

Gene Synonyms

A3b, LGMD2E, SGC

Location

About this transcript

This transcript has 6 exons, is annotated with 5 domains and features, is associated with 8611 variant alleles and maps to 639 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000381431.5	SGCB-001	4431	318aa	ENSP00000370839.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS3488	Q16585 Q5U0N0	NM_000232.4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000535450.1	SGCB-201	2645	248aa	ENSP00000441199.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B7Z635	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000506357.1	SGCB-002	663	100aa	ENSP00000421235.1	Nonsense mediated decay		H0YA15	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000514133.1	SGCB-003	599	93aa	ENSP00000425818.1	Nonsense mediated decay		H0YA15	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,

Summary

Statistics

Exons: 6, Coding exons: 6, Transcript length: 4,431 bps, Translation length: 318 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q16585

CCDS

This transcript is a member of the Human CCDS set: CCDS3488

Version

ENST00000381431.5

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000250596 (version 2)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.