Transcript: ENST00000380871.4 NKX3-1-001

Description

NK3 homeobox 1 [Source:HGNC Symbol;Acc:7838]

Gene Synonyms

BAPX2, NKX3, NKX3.1, NKX3A

Location

About this transcript

This transcript has 2 exons, is annotated with 17 domains and features, is associated with 2256 variant alleles and maps to 460 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000380871.4	NKX3-1-001	3271	234aa	ENSP00000370253.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS6042	Q99801	NM_006167.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000523261.1	NKX3-1-004	713	159aa	ENSP00000429729.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS59095	Q99801	NM_001256339.1	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,

Summary

Statistics

Exons: 2, Coding exons: 2, Transcript length: 3,271 bps, Translation length: 234 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q99801

CCDS

This transcript is a member of the Human CCDS set: CCDS6042

Version

ENST00000380871.4

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000215141 (version 2)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.