Transcript: ENST00000377833.4 CUBN-001

Description

cubilin (intrinsic factor-cobalamin receptor) [Source:HGNC Symbol;Acc:2548]

Gene Synonyms

IFCR, MGA1, gp280

Location

About this transcript

This transcript has 67 exons, is annotated with 195 domains and features, is associated with 141321 variant alleles and maps to 1768 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000377833.4	CUBN-001	11949	3623aa	ENSP00000367064.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS7113	B3KQA6 O60494	NM_001081.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000433666.1	CUBN-004	958	105aa	ENSP00000415970.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H7C480	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000377823.1	CUBN-003	705	170aa	ENSP00000367054.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B0YIZ6	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000438254.1	CUBN-002	599	88aa	ENSP00000391830.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q5JQ33	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,

Summary

Statistics

Exons: 67, Coding exons: 67, Transcript length: 11,949 bps, Translation length: 3,623 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: O60494

CCDS

This transcript is a member of the Human CCDS set: CCDS7113

Version

ENST00000377833.4

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000047009 (version 1)

Annotation Attributes

low sequence quality [Definitions]

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.