Transcript: ENST00000376228.5 HLA-C-001

Description

major histocompatibility complex, class I, C [Source:HGNC Symbol;Acc:4933]

Gene Synonyms

D6S204, HLA-C, HLA-Cw, HLA-DNA, HLA-JY3, HLAC, HLC-C, PSORS1

Location

Chromosome 6: 31,236,526-31,239,863 reverse strand.

About this transcript

This transcript has 8 exons, is annotated with 21 domains and features, is associated with 3838 variant alleles and maps to 1375 oligo probes.

Gene

This transcript is a product of gene ENSG00000204525.10 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000376228.5	HLA-C-001	1536	366aa	ENSP00000365402.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS34393	B0JF23 B1PQ27 B5BLP2 B8Y6A8 B9WPN5 C0KJZ4 C5IZU6 C5IZU8 C5J031 C6JSX9 C6K4M5 C6K4N7 C6K4N9 C6K4P2 C7C4Z5 C7EDP3 C7FDT6 C7FDU2 C7FDU3 C8CH96 C8CHA9 C9WER2 C9WER5 C9WER9 C9WES3 C9WEU1 C9WEV1 C9WEV2 D2DKH1 D3U3P6 D3U3P8 D3U733 D3U748 D3U749 D5FZM4 D5FZR1 D5M8B1 D6C6C3 D6C6D4 D6C6D5 D6C6F9 D6MJH9 D6MJI1 D6MJJ2 D6MKV1 D6ML93 D6MLD2 D6MLE9 D7NP34 D7NQZ6 D7RJ45 D9UAZ7 E0WBV8 E0WBV9 E0X9L4 E0YTN9 E0YTP0 E1U661 E1Y7F7 E2DHB8 E2GJH5 E2GJI9 E3Q1I6 E3SGA4 E3SGA7 E3SGA8 E3SWK0 F1CCJ3 F1CCK3 F1CCL2 F2VNQ1 F2VNQ5 F2VNR5 F2VNS0 F4YU76 F4YU88 F6IQJ9 F6IQK1 F6IQK2 F6IQK3 F6IQK4 F6IQK5 F6IQK7 F6IQL2 F6IQL4 F6IQL6 F6IQL8 F6KRW3 F6KRW4 F6KRX3 F6KRX9 F6KRY0 F6KRY2 F6KRY5 F6KS07 F6KS09 F6KS10 F6KS12 F6KVT8 F8R1B3 F8R8K2 F8SKY8 F8SKZ4 F8SKZ5 F8SKZ7 F8SL01 F8SL02 F8SY67 G0WVC4 G0X8S7 G0ZMJ9 G0ZMM1 G1EMQ7 G1EMR0 G1EMR4 G1EMR6 G1EMR7 G1EMS2 G1EMS4 G1EMT2 G1EMT3 G1EMT7 G1EMT8 G1EMU5 G1EMU8 G1ENT0 G1ENT1 G1ENT3 G1ENT7 G1ENT9 G1ENV2 G1ENV3 G1ENV4 G1ENW0 G1ENW1 G1ENX1 G1ENX4 G1ENX7 G1EQ55 G1EQ80 G1EQD5 G1EQH0 G1EQI3 G1EQI7 G3D6E6 G3D6F5 G3D6F7 G3D6G8 G3D6H6 G9HW51 G9HW96 G9HWA8 G9HWA9 G9I2N2 G9I2N5 G9I2N8 G9I2P1 H2BE96 H2DMJ8 H2DMK4 H6A2G1 H6V083 H9BQ94 H9BQ96 I2GUK7 I6M569 I6M570 I6MHJ6 I6NN86 I6NS49 I6NXH6 I6NXM6 I6SJ94 I6TF01 I6TN19 I6TRX6 I6TRY5 I7A4F1 I7APJ0 J7JHR0 J7JWN4 J7K040 J9PVC3 J9PVD3 J9PVP1 K9L7E8 K9L7R5 K9L7R8 K9L7Z3 K9L8F4 M9P8K5 M9P8L0 M9P8L2 M9P8L4 M9P8L7 M9P8L8 M9P8L9 M9P8M1 M9P944 M9P955 M9P959 M9P961 M9P962 M9P965 M9P971 M9P9A7 M9P9D8 M9P9F2 M9P9F8 M9P9H2 M9P9H8 M9P9L0 M9P9L6 M9P9M9 M9P9N1 M9P9P5 M9P9R9 M9P9U4 M9P9U9 M9P9V5 M9P9W3 M9P9W6 M9PA33 M9PAC6 M9PAF2 M9PAF4 M9PAF5 M9PAF9 M9PAG2 M9PAG3 M9PAG6 M9PAK7 M9PAK8 M9XMB2 N0A4B4 O19579 P10321 Q0MT77 Q29752 Q5C9P9 Q6R739 Q8HWG1 Q8HWM5 Q95HC2 Q9MY32 Q9TNT2 S5DHQ4 S5DHQ8 S5DI31 S5DI32 S5DLF2 S5DLG2 S5DN70 S5DU09	NM_002117.5	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000383329.3	HLA-C-002	1554	372aa	ENSP00000372819.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A2AEA2 B1PQ27 B8Y6A8 C0KJZ4 C5IZU6 C5IZU8 C5J031 C6JSX9 C6K4M5 C6K4N7 C6K4N9 C6K4P2 C7C4Z5 C7EDP3 C7FDT6 C7FDU2 C7FDU3 C8CH96 C8CHA9 C9WER2 C9WER5 C9WER9 C9WES3 C9WEU1 C9WEV1 C9WEV2 D2DKH1 D3U3P6 D3U3P8 D3U733 D3U748 D3U749 D5FZM4 D5FZR1 D5M8B1 D6C6C3 D6C6D4 D6C6D5 D6C6F9 D6MJH9 D6MJI1 D6MJJ2 D6MKV1 D6ML93 D6MLD2 D6MLE9 D7NP34 D7NQZ6 D7RJ45 D9UAZ7 E0WBV8 E0WBV9 E0X9L4 E0YTN9 E0YTP0 E1U661 E1Y7F7 E2DHB8 E2GJH5 E2GJI9 E3Q1I6 E3SGA4 E3SGA7 E3SGA8 E3SWK0 F1CCJ3 F1CCK3 F1CCL2 F2VNQ1 F2VNQ5 F2VNR5 F2VNS0 F4YU76 F4YU88 F6KRW3 F6KRW4 F6KRX3 F6KRX9 F6KRY0 F6KRY2 F6KRY5 F6KS07 F6KS09 F6KS10 F6KS12 F6KVT8 F8R1B3 F8R8K2 F8SKY8 F8SKZ4 F8SKZ5 F8SKZ7 F8SL01 F8SL02 F8SY67 G0WVC4 G0X8S7 G0ZMJ9 G0ZMM1 G1EMQ7 G1EMR0 G1EMR4 G1EMR6 G1EMR7 G1EMS2 G1EMS4 G1EMT2 G1EMT3 G1EMT7 G1EMT8 G1EMU5 G1EMU8 G1ENT0 G1ENT1 G1ENT3 G1ENT7 G1ENT9 G1ENV2 G1ENV3 G1ENV4 G1ENW0 G1ENW1 G1ENX1 G1ENX4 G1ENX7 G1EQ55 G1EQ80 G1EQD5 G1EQH0 G1EQI3 G1EQI7 G3D6E6 G3D6F5 G3D6F7 G3D6G8 G3D6H6 G9HW51 G9HW96 G9HWA8 G9HWA9 G9I2N2 G9I2N5 G9I2N8 G9I2P1 H2BE96 H2DMJ8 H2DMK4 H6A2G1 H6V083 H9BQ94 H9BQ96 I2GUK7 I6M569 I6M570 I6MHJ6 I6NN86 I6NS49 I6NXH6 I6NXM6 I6SJ94 I6TF01 I6TN19 I6TRX6 I6TRY5 I7A4F1 I7APJ0 J7JHR0 J7JWN4 J7K040 J9PVC3 J9PVD3 J9PVP1 K9L7E8 K9L7R5 K9L7R8 K9L7Z3 K9L8F4 M9P8K5 M9P8L0 M9P8L2 M9P8L4 M9P8L7 M9P8L8 M9P8L9 M9P8M1 M9P944 M9P955 M9P959 M9P961 M9P962 M9P965 M9P971 M9P9A7 M9P9D8 M9P9F2 M9P9F8 M9P9H2 M9P9H8 M9P9L0 M9P9L6 M9P9M9 M9P9N1 M9P9P5 M9P9R9 M9P9U4 M9P9U9 M9P9V5 M9P9W3 M9P9W6 M9PA33 M9PAC6 M9PAF2 M9PAF4 M9PAF5 M9PAF9 M9PAG2 M9PAG3 M9PAG6 M9PAK7 M9PAK8 M9XMB2 N0A4B4 O19579 Q0MT77 Q29752 Q8HWM5 Q9MY32 Q9TNT2 S5DHQ4 S5DHQ8 S5DI31 S5DI32 S5DLF2 S5DLG2 S5DN70 S5DU09	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000415537.1	HLA-C-007	782	261aa	ENSP00000400410.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B8Y6A8 C0KJZ4 C5IZU6 C5IZU8 C5J031 C6JSX9 C6K4M5 C6K4N7 C6K4N9 C6K4P2 C7C4Z5 C7FDT6 C7FDU2 C7FDU3 C8CH96 C8CHA9 C9WER2 C9WER5 C9WER9 C9WES3 C9WEU1 C9WEV1 C9WEV2 D2DKH1 D3U3P6 D3U3P8 D3U733 D3U748 D3U749 D5FZM4 D5FZR1 D5M8B1 D6C6C3 D6C6D4 D6C6D5 D6C6F9 D6MJH9 D6MJI1 D6MJJ2 D6MKV1 D6ML93 D6MLD2 D6MLE9 D7NP34 D7NQZ6 D7RJ45 E0WBV8 E0WBV9 E0X9L4 E0YTN9 E0YTP0 E1U661 E2DHB8 E2GJH5 E2GJI9 E3Q1I6 E3SGA4 E3SGA7 E3SGA8 E3SWK0 F1CCJ3 F1CCK3 F1CCL2 F2VNQ1 F2VNQ5 F2VNR5 F2VNS0 F4YU76 F4YU88 F6KRW3 F6KRW4 F6KRX3 F6KRX9 F6KRY0 F6KRY2 F6KRY5 F6KS07 F6KS09 F6KS10 F6KS12 F8R1B3 F8R8K2 F8SKY8 F8SKZ4 F8SKZ5 F8SKZ7 F8SL01 F8SL02 F8SY67 G0WVC4 G0X8S7 G0ZMJ9 G0ZMM1 G1EMQ7 G1EMR0 G1EMR4 G1EMR6 G1EMR7 G1EMS2 G1EMS4 G1EMT2 G1EMT3 G1EMT7 G1EMT8 G1EMU5 G1EMU8 G1ENT0 G1ENT1 G1ENT3 G1ENT7 G1ENT9 G1ENV2 G1ENV3 G1ENV4 G1ENW0 G1ENW1 G1ENX1 G1ENX4 G1ENX7 G1EQ55 G1EQ80 G1EQD5 G1EQH0 G1EQI3 G1EQI7 G3D6E6 G3D6F5 G3D6F7 G3D6G8 G3D6H6 G9HW51 G9HW96 G9HWA8 G9HWA9 G9I2N2 G9I2N5 G9I2N8 G9I2P1 H2BE96 H2DMJ8 H2DMK4 H6A2G1 H6V083 H9BQ94 H9BQ96 I6M569 I6M570 I6MHJ6 I6NN86 I6NS49 I6NXH6 I6NXM6 I6SJ94 I6TF01 I6TN19 I6TRX6 I6TRY5 I7A4F1 I7APJ0 J7JHR0 J7JWN4 J7K040 J9PVC3 J9PVD3 J9PVP1 K9L7E8 K9L7R5 K9L7R8 K9L7Z3 K9L8F4 M9P8K5 M9P8L0 M9P8L2 M9P8L4 M9P8L7 M9P8L8 M9P8L9 M9P8M1 M9P944 M9P955 M9P959 M9P961 M9P962 M9P965 M9P971 M9P9A7 M9P9D8 M9P9F2 M9P9F8 M9P9H2 M9P9H8 M9P9L0 M9P9L6 M9P9M9 M9P9N1 M9P9P5 M9P9R9 M9P9U4 M9P9U9 M9P9V5 M9P9W3 M9P9W6 M9PA33 M9PAC6 M9PAF2 M9PAF4 M9PAF5 M9PAF9 M9PAG2 M9PAG3 M9PAG6 M9PAK7 M9PAK8 M9XMB2 N0A4B4 O19579 Q0MT77 Q29752 Q8HWM5	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000376237.4	HLA-C-006	1538	131aa	ENSP00000365412.4	Nonsense mediated decay		F8W9Z8 O19579 Q29752 Q8HWM5 Q9MY32	-	-
ENST00000487245.1	HLA-C-005	1880	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000470363.1	HLA-C-010	1279	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000495835.1	HLA-C-008	1073	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000484378.1	HLA-C-012	862	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000466892.1	HLA-C-011	754	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 8, Coding exons: 8, Transcript length: 1,536 bps, Translation length: 366 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: P10321

CCDS

This transcript is a member of the Human CCDS set: CCDS34393

Version

ENST00000376228.5

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000076281 (version 3)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000376228.5 HLA-C-001

Summary