Transcript: ENST00000375840.4 STRADA-007

Description

STE20-related kinase adaptor alpha [Source:HGNC Symbol;Acc:30172]

Gene Synonyms

LYK5, NY-BR-96, PMSE, STRAD, Stlk

Location

Chromosome 17: 61,780,192-61,819,143 reverse strand.

About this transcript

This transcript has 12 exons, is annotated with 9 domains and features, is associated with 16929 variant alleles and maps to 481 oligo probes.

Gene

This transcript is a product of gene ENSG00000266173.1 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000336174.6	STRADA-001	2143	431aa	ENSP00000336655.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS32703	J3QKR7 J3QKU4 J3QRC1 Q7RTN6	NM_001003787.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000245865.5	STRADA-005	2962	234aa	ENSP00000245865.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding		J3QKR7 J3QRC1 Q86YC8	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000392950.4	STRADA-003	2762	348aa	ENSP00000376677.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS11642	J3KSA2 J3QKR7 J3QRC1 Q7RTN6	NM_153335.5	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000375840.4	STRADA-007	2121	373aa	ENSP00000365000.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS42367	J3QKR7 J3QRC1 Q7RTN6	NM_001003788.2	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000447001.3	STRADA-004	1398	299aa	ENSP00000398841.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS54156	Q7RTN6	NM_001165970.1	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000579340.1	STRADA-016	1168	173aa	ENSP00000462530.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		J3KSK5 J3QKR7 J3QRC1	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000582137.1	STRADA-006	1159	314aa	ENSP00000462922.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS58585	J3QKR7 J3QRC1 Q7RTN6	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000582026.1	STRADA-022	961	55aa	ENSP00000464213.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000578008.1	STRADA-020	798	167aa	ENSP00000464547.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		J3QS66	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000579549.1	STRADA-011	604	72aa	ENSP00000462384.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		J3KSA2 J3QRC1	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000582030.1	STRADA-013	582	50aa	ENSP00000464139.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		J3QRC1	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000580338.1	STRADA-009	563	78aa	ENSP00000463203.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		J3QKR7 J3QRC1	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000584110.1	STRADA-012	563	10aa	ENSP00000462496.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000578801.1	STRADA-019	560	131aa	ENSP00000463872.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		J3QQS3	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000580288.1	STRADA-010	525	45aa	ENSP00000463238.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		J3QKU4	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000581243.1	STRADA-015	938	40aa	ENSP00000464085.1	Nonsense mediated decay		J3QR78	-	-
ENST00000580039.1	STRADA-023	1046	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000581505.1	STRADA-024	535	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000579350.1	STRADA-018	470	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000583085.1	STRADA-008	3685	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000577375.1	STRADA-021	696	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000579318.1	STRADA-017	623	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000578507.1	STRADA-014	580	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 12, Coding exons: 9, Transcript length: 2,121 bps, Translation length: 373 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q7RTN6

CCDS

This transcript is a member of the Human CCDS set: CCDS42367

Version

ENST00000375840.4

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000443890 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

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Recent locations

Transcript: ENST00000375840.4 STRADA-007

Summary