Transcript: ENST00000374990.2 TGFBR1-003

Description

transforming growth factor, beta receptor 1 [Source:HGNC Symbol;Acc:11772]

Gene Synonyms

AAT5, ACVRLK4, ALK-5, ALK5, LDS1A, LDS2A, MSSE, SKR4, TGFR-1

Location

Chromosome 9: 101,867,393-101,915,931 forward strand.

About this transcript

This transcript has 8 exons, is annotated with 18 domains and features, is associated with 22078 variant alleles and maps to 646 oligo probes.

Gene

This transcript is a product of gene ENSG00000106799.8 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000374994.4	TGFBR1-001	6516	503aa	ENSP00000364133.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS6738	B4DY26 F8VVC4 P36897 Q5T7S2	NM_004612.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000552516.1	TGFBR1-004	5933	507aa	ENSP00000447297.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F8VRH6 F8W0K6 P36897	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000374990.2	TGFBR1-003	5720	426aa	ENSP00000364129.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS47998	F8VXZ5 P36897	NM_001130916.1	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000550253.1	TGFBR1-007	1538	434aa	ENSP00000450052.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B4DY26 F8VVC4	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000549021.1	TGFBR1-010	680	114aa	ENSP00000449028.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F8VXZ5	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000548365.1	TGFBR1-011	582	114aa	ENSP00000448518.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F8VRH6	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000546584.1	TGFBR1-012	565	188aa	ENSP00000447707.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F8VVC4 H0YHS4	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000547314.1	TGFBR1-008	533	118aa	ENSP00000449934.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F8VVC4	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000552573.2	TGFBR1-009	526	126aa	ENSP00000447182.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F8VRH6 F8W0K6	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000549766.1	TGFBR1-005	1678	383aa	ENSP00000446685.1	Nonsense mediated decay		F8VRH6 F8W0K6 F8W1R9	-	-

Summary

Statistics

Exons: 8, Coding exons: 8, Transcript length: 5,720 bps, Translation length: 426 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: P36897

CCDS

This transcript is a member of the Human CCDS set: CCDS47998

Version

ENST00000374990.2

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000406313 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

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Recent locations

Transcript: ENST00000374990.2 TGFBR1-003

Summary