Transcript: ENST00000373857.3 PTAFR-001

Description

platelet-activating factor receptor [Source:HGNC Symbol;Acc:9582]

Gene Synonyms

PAFR

Location

About this transcript

This transcript has 2 exons, is annotated with 32 domains and features, is associated with 13054 variant alleles and maps to 461 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000373857.3	PTAFR-001	4491	342aa	ENSP00000362965.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS318	P25105	NM_001164723.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000539896.1	PTAFR-201	4191	342aa	ENSP00000442658.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS318	P25105	NM_001164723.2	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000305392.3	PTAFR-002	1539	342aa	ENSP00000301974.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS318	P25105	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,

Summary

Statistics

Exons: 2, Coding exons: 1, Transcript length: 4,491 bps, Translation length: 342 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: P25105

CCDS

This transcript is a member of the Human CCDS set: CCDS318

Version

ENST00000373857.3

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000011258 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.