Transcript: ENST00000373150.4 MAP7D1-002

Description

MAP7 domain containing 1 [Source:HGNC Symbol;Acc:25514]

Gene Synonyms

FLJ10350, FLJ39022, KIAA1187, PARCC1, RPRC1

Location

Chromosome 1: 36,621,799-36,646,450 forward strand.

About this transcript

This transcript has 18 exons, is annotated with 17 domains and features, is associated with 11586 variant alleles and maps to 614 oligo probes.

Gene

This transcript is a product of gene ENSG00000116871.11 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000373151.2	MAP7D1-009	3324	841aa	ENSP00000362244.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS30673	C9JIR3 D3DPS3 E9PLH3 Q3KQU3	NM_018067.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000316156.4	MAP7D1-001	3456	803aa	ENSP00000320228.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS65493	E9PLH3 Q3KQU3	NM_001286365.1	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000373150.4	MAP7D1-002	3238	808aa	ENSP00000362243.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS65492	B3KU03 C9JIR3 E9PLH3 Q3KQU3	NM_001286366.1	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000373148.4	MAP7D1-003	1797	377aa	ENSP00000362241.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q3KQU3	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000429533.2	MAP7D1-005	959	244aa	ENSP00000390091.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JIR3 E9PLH3	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000530975.1	MAP7D1-015	744	248aa	ENSP00000437046.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000530729.1	MAP7D1-010	567	140aa	ENSP00000435126.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E9PLH3	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000474796.1	MAP7D1-004	906	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000487131.2	MAP7D1-013	733	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000527764.1	MAP7D1-012	945	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000487114.1	MAP7D1-006	890	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000462118.1	MAP7D1-008	776	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000532131.1	MAP7D1-014	771	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 18, Coding exons: 18, Transcript length: 3,238 bps, Translation length: 808 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q3KQU3

CCDS

This transcript is a member of the Human CCDS set: CCDS65492

Version

ENST00000373150.4

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000020763 (version 2)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000373150.4 MAP7D1-002

Summary