Transcript: ENST00000373019.4 SF3A3-001

Description

splicing factor 3a, subunit 3, 60kDa [Source:HGNC Symbol;Acc:10767]

Gene Synonyms

PRP9, PRPF9, SAP61, SF3a60

Location

Chromosome 1: 38,422,647-38,456,593 reverse strand.

About this transcript

This transcript has 17 exons, is annotated with 8 domains and features, is associated with 16152 variant alleles and maps to 671 oligo probes.

Gene

This transcript is a product of gene ENSG00000183431.7 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000373019.4	SF3A3-001	3673	501aa	ENSP00000362110.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS428	Q12874	NM_006802.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000448721.2	SF3A3-201	1538	448aa	ENSP00000392027.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E7EUT8	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000489537.1	SF3A3-008	891	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000460925.1	SF3A3-004	793	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000461869.1	SF3A3-007	776	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000487062.1	SF3A3-003	775	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000470585.1	SF3A3-005	704	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000462258.1	SF3A3-002	527	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000488934.1	SF3A3-006	273	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-

Summary

Statistics

Exons: 17, Coding exons: 17, Transcript length: 3,673 bps, Translation length: 501 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q12874

CCDS

This transcript is a member of the Human CCDS set: CCDS428

Version

ENST00000373019.4

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000012976 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000373019.4 SF3A3-001

Summary